XLOC_022773 (zgc:56095)


Basic Information

Item Value
gene id XLOC_022773
gene name zgc:56095
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 7741521 ~ 7746478 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045288
GTCGCTGTGTGTAAGCAATAGAGTAGACGCCGTGCCGAGAAAACAATACGGTAATATAAACAGGATAAGTCAAAGCGTTTAGGTTTTTCCCCTCGTTTCCAGCAGAAGTCTGTCGACTATCGTTGTTGAAAAGAAATGTCTCTCATCAAGCAGAATCTGCACTCAAATAATGAGGCGAACATCAACAAGCTGATCAACCTGAAGCTGACGGCCTCTTATGTGTATCTCTCTCTGGGAATGTATTTTGATAGGGATGATGTGGCTCTACCCAACTTCTCCAAGTTTTTCCTGGAGCGTTCACATAAGGAGAGAGATCATGCGGAGGACCTGCTGGAGTATCAAAACACAAGAGGAGGACGAATCCTTCTTCAGACTGTTGCGAAGCCCAGTCGTGATGACTGGAAAGGAGGTATTGATGCGCTCGCTTTTTCTCTGGAACATCAAAAGTCTATTAACCGATCCTTGCTGGAGGTCCATCGAGTGGCAGGAGAGCACTCTGACCCTCATCTCTCTGACTTCCTAGAAGGTAAATTCTTCACTGACAGCCATGAAACCATCAAGACATTGGGTGACTACTTGGGCAGTCTGAGTCGCATCACGTCTTCGGACCCACACGGCAAGATGGCGGAGTATCTGTTTGACAAGCACACACTCTCATCCACTCAGATCTCATGAGTTTGCTGCAACAAATTCACGTTACCGATACGCAAATGTGGTCAACTTCTCTATTTCATTTTCACCTTTCAAGATACATTCCAGTATGAACCACATTTGACAAGTTGAATGAACGATAATCAATGCAAAAGTTAGAAAATGCTGTGAAATGTGCTTTTATCCAAACATGGTGCCCTCGTGTTAAAGCCTTAACTATCCCTTGACTGTTTACAGAATAGTTTAGGTGCCGTGTAAAACTATCTTGTCCAAAACCAGCCTGTAGGATTTTCAAATGGGGTTAAGTACAGCGCAAAAATGAAAGAGTATTTTTAGAACGCCAAAAGCTGAATTGTTTTACCTCCAAAATGGTGCTCTGTGTcaataatgcaataaataaagCAAGCATTCCAAACAAA
>TCONS_00045289
AGTACTTCCACTGCCTTTGTGGCACAGTTGATAAATGTAGTTATACTGCAGAAGTTCACTATCAGTCTTGTTCTGTTATCAGCACTGAACAGTGAACTCTGTTAGAGAGAGTCGTGCAAAATGTCTCTCATCAAGCAGAATCTGCACTCAAATAATGAGGCGAACATCAACAAGCTGATCAACCTGAAGCTGACGGCCTCTTATGTGTATCTCTCTCTGGGAATGTATTTTGATAGGGATGATGTGGCTCTACCCAACTTCTCCAAGTTTTTCCTGGAGCGTTCACATAAGGAGAGAGATCATGCGGAGGACCTGCTGGAGTATCAAAACACAAGAGGAGGACGAATCCTTCTTCAGACTGTTGCGAAGCCCAGTCGTGATGACTGGAAAGGAGGTATTGATGCGCTCGCTTTTTCTCTGGAACATCAAAAGTCTATTAACCGATCCTTGCTGGAGGTCCATCGAGTGGCAGGAGAGCACTCTGACCCTCATCTCTCTGACTTCCTAGAAGGTAAATTCTTCACTGACAGCCATGAAACCATCAAGACATTGGGTGACTACTTGGGCAGTCTGAGTCGCATCACGTCTTCGGACCCACACGGCAAGATGGCGGAGTATCTGTTTGACAAGCACACACTCTCATCCACTCAGATCTCATGA
>TCONS_00045290
ATGTCTCTCATCAAGCAGAATCTGCACTCAAATAATGAGGCGAACATCAACAAGCTGATCAACCTGAAGCTGACGGCCTCTTATGTGTATCTCTCTCTGGGAATGTATTTTGATAGGGATGATGTGGCTCTACCCAACTTCTCCAAGTTTTTCCTGGAGCGTTCACATAAGGAGAGAGATCATGCGGAGGACCTGCTGGAGTATCAAAACACAAGAGGAGGACGAATCCTTCTTCAGACTGTTGCGAAGCCCAGTCGTGATGACTGGAAAGGAGGTATTGATGCGCTCGCTTTTTCTCTGGAACATCAAAAGTCTATTAACCGATCCTTGCTGGAGGTCCATCGAGTGGCAGGAGAGCACTCTGACCCTCATCTCTCTGACTTCCTAGAAGGTAAATTCTTCACTGACAGCCATGAAACCATCAAGACATTGGGTGACTACTTGGGCAGTCTGAGTCGCATCACGTCTTCGGACCCACACGGCAAGATGGCGGAGTATCTGTTTGACAAGCACACACTCTCATCCACTCAGATCTCATGAGTTTGCTGCAACAA

Function

symbol description
zgc:56095 Predicted to enable ferric iron binding activity and ferrous iron binding activity. Predicted to be involved in intracellular sequestering of iron ion. Predicted to act upstream of or within cellular iron ion homeostasis and iron ion transport. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0006880 intracellular sequestering of iron ion biological_process
GO:0006826 iron ion transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008198 ferrous iron binding molecular_function
GO:0008199 ferric iron binding molecular_function
GO:0004322 ferroxidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1948 Predicted to enable ferric iron binding activity and ferrous iron binding activity. Predicted to be involved in intracellular sequestering of iron ion. Predicted to act upstream of or within cellular iron ion homeostasis and iron ion transport. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000018461

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045288 False 1070 mRNA 0.43 5 7741521 7746478
TCONS_00045289 False 660 mRNA 0.47 5 7742199 7746083
TCONS_00045290 True 554 mRNA 0.48 4 7742441 7746097

Neighbor

gene id symbol gene type direction distance location
XLOC_022772 btr33 coding upstream 26959 7708652 ~ 7714562 (+)
XLOC_022771 cavin1b coding upstream 73363 7631797 ~ 7668158 (+)
XLOC_022770 NA coding upstream 183631 7553299 ~ 7557890 (+)
XLOC_022769 kmt2ca coding upstream 191911 7336411 ~ 7549610 (+)
XLOC_022768 XRCC2 coding upstream 411365 7322116 ~ 7330156 (+)
XLOC_022774 ptprh coding downstream 35835 7782313 ~ 7816871 (+)
XLOC_022775 zgc:101569 coding downstream 81619 7828097 ~ 7854229 (+)
XLOC_022776 bmp6 coding downstream 114895 7861373 ~ 7935809 (+)
XLOC_022777 NA coding downstream 496546 8243024 ~ 8245079 (+)
XLOC_022778 NA coding downstream 521105 8267583 ~ 8295447 (+)
XLOC_022766 CR790361.1 non-coding upstream 1159353 6582052 ~ 6582168 (+)
XLOC_022765 BX120013.1 non-coding upstream 1336205 6405194 ~ 6405316 (+)
XLOC_022764 NA non-coding upstream 1341736 6389435 ~ 6399785 (+)
XLOC_022761 NA non-coding upstream 1652268 6082660 ~ 6089253 (+)
XLOC_022780 NA non-coding downstream 1085576 8832054 ~ 8841380 (+)
XLOC_022785 NA non-coding downstream 1528766 9275244 ~ 9281017 (+)
XLOC_022798 NA non-coding downstream 2670826 10417304 ~ 10509462 (+)

Expression


Co-expression Network