XLOC_022801 (si:dkey-37o8.1)


Basic Information

Item Value
gene id XLOC_022801
gene name si:dkey-37o8.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 10898671 ~ 10901351 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045342
CTGAAGTCACAAGAAGAACAAAGAGTGTATCTGAAATTTGGTAGTTTGGAGGGTGTAAAACGTGTAATTTACCAAATGGCAAAAGAAAGGATTCATATCAACTTGGTTATCATTGGCCATGTAGATGGTGGCAAATCCACAACCACTGGTCATTTGGTTTATAAATGTGGAGGAATTGACCATCGAACAATTGAGAAGTATGAGAAGGCTGCAACCCAAATGGGAAAGAGTTCCTTCAAGTATGCCTGGGTTCTGGACAAACTGAAAGCGGAGAGGGAACGTGGGATCACGATTGACATTTCCCTGCTGAAATTCAACACTCAGAAGTACACCTTTACCATAATCGATGCACCTGGTCATCgtgatttcattaaaaacatgatcACTGGAACCTCACAGGCTGATGCTGCTCTGCTGATCGTCTCTGCAGCAAAGGGTGAATTTGAGGCTGGAATTTCTCGGAACGGTCAGACAAGAGAACATGCTCTACTGGCGTACACTCTTGGGGTCAAACAGCTTGTAGTTTGTGTGAACAAAATGGACCTGACAGAGCCACCATTCAGCCAGAAACGTTATGATGAAGTGGTTAGGAATGTTTCCGTGTTCGTCAAGAAGATCGGCTTTGAGATAGGTGCTGTACCTTTCATACCCATTTCTGGTTGGAGTGGTGAGAACATGATTGTCCCATCCCAAAAGATGCAATGGTTTAAAGGGTGGAAGCTCAAGAGAAAAGAAGGCCACTGTCATGGCCGAACCTTGTTGGAAGTGCTTGATTCCCTACATCCTCCAGTGCGCAATGCAGGCAAGCCCCTGCGCCTTCCCCTACAAGATGTCTATAAGATTGGCGGTGTTGGAACTGTCCCTGTGGGTAAGATTGAAACTGGGGTCTTAAAACCAGGCATGGTTCTCACCTTCTCACCAGCAAAACTGACTGCTGAGGTCAAGTCCATAGAGATGCATCACCAGGGTCTTCAGACTGCTCTTCCTGGGCATAATGTGGGCttcaacattaaaaatgtatctgTGAAGAACCTTCGAAGAGGTGATGTAGCTGGGAATGCACAGCAGGACCCACCATCAGATGTCAGCAGTTTTATTGCTCAGATTATTATGCTGAACCACCCAGGCAAAATAAAGGTTGGTTACTCTCCTGTGCTAGACTGCCACACAACCCATGTTTCCTGTCGTTTTGCTGAGCTAAGGGAGAAGCTAGATCGTCGTTCTGGTAGGAAACTGGAAAGTTGGCCCCAGTACCTGAGGTCAGGAGATGGTGCCACAGTCAAACTGGTCCCAAATAAACCCTTATGTGTGGAGAGCTTCTTTCATTATCCTCCTCTGgGTCGCTTTGCTGTACGGGATTTAAAACAGACTGTGGCTGTCGGGGTCATCAAGTCTGTGGAGAAGGTTGACCAAGCCAAAAAAACCTCCCAGAAAGCCCCTGTGTCAAAATGAGTTCATCATTTTGTCCCTTTTTATAACTTTATTTACCAGCAGTCTGGTATGTGAACCCAAAAGGTTACTCTTTAAGTTTGTGTAGTTTTATGCGAGTcacaatatttttctttaaagccGCTTTTTAAATGCGTTGCTGGTGAATTGGGTTGTCTGAACTGATAATGTAACCCAAAATGAGGTTTGGATGAAGCGTTGAGAGCTGTATATTGCTGGACTGCAAATAAATTTGAGTTTACACTTCAGTTGGAAA

Function

symbol description
si:dkey-37o8.1 Predicted to enable GTPase activity and translation elongation factor activity. Predicted to be involved in translational elongation.

GO:

id name namespace
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5667 Predicted to enable GTPase activity and translation elongation factor activity. Predicted to be involved in translational elongation.

Ensembl:

ensembl_id ENSDARG00000071727

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045342 True 1705 mRNA 0.45 7 10898671 10901351

Neighbor

gene id symbol gene type direction distance location
XLOC_022800 CT573414.1 coding upstream 80586 10817960 ~ 10818085 (+)
XLOC_022798 NA coding upstream 389209 10417304 ~ 10509462 (+)
XLOC_022799 CT573344.2 coding upstream 466232 10430526 ~ 10432439 (+)
XLOC_022797 myca coding upstream 482387 10413484 ~ 10416284 (+)
XLOC_022796 si:ch211-69l10.4 coding upstream 491874 10397865 ~ 10406797 (+)
XLOC_022802 zfand1 coding downstream 181795 11083146 ~ 11087183 (+)
XLOC_022803 prlh2 coding downstream 204435 11105786 ~ 11110087 (+)
XLOC_022804 NA coding downstream 433284 11334635 ~ 11346871 (+)
XLOC_022805 ackr4b coding downstream 480049 11381400 ~ 11390669 (+)
XLOC_022806 NA coding downstream 638157 11539508 ~ 11539715 (+)
XLOC_022785 NA non-coding upstream 1617654 9275244 ~ 9281017 (+)
XLOC_022780 NA non-coding upstream 2057291 8832054 ~ 8841380 (+)
XLOC_022807 BX005153.2 non-coding downstream 663545 11564896 ~ 11566442 (+)
XLOC_022808 NA non-coding downstream 695739 11597090 ~ 11598529 (+)
XLOC_022809 BX005153.3 non-coding downstream 712906 11614257 ~ 11614373 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000327_03658243_03660281 EEF1A2 coding CI01000327 null 3658243 ~ 3660528 (+)