XLOC_022808


Basic Information

Item Value
gene id XLOC_022808
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 11597090 ~ 11598529 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046795
agacacacatgaggaagctcgactcagcTTGGCTTGCAGACAGATGAGGACGGTGATTGCCCGTCATACACCTAAAgaaagaacaggGGCATTAAAGACACAACTATAGTGAACGTGATGAAGAAAAAGtatttggaacaaagaggctggataaaaaactgatatgaagatttcagaaattgatgcagcaccacaagtaccatcaccaccaATGACTATGGCAGGATCCTTAAgaacaccatcaagatgcacagatgctgtacattccagtacacctatgaacatttacagtccttgTTCAAGTGCAGTCCGAGATCAAGACAACTTATTGCAACTcgtcatgtctttcacgactgaaaaaaagttttaaaatcatgttacgtcataaagcagcaactgtgcctgattctcacaaatcagcaaaaccaaaacagacgtgatgaaattccagatgtaaacacatttgacctttcTTTGTCCAATTTGATTTGTAAaaacttgaaaatcaactaaacgagcagcccgaacaaatgaagaaactggtaagtttcTTGCTTATTTCtaagtgttttatgtttatttatttatttatttatttatgtgtttttttttgcttcgtaggtagcctactttggaATCATGGGTGTTTTCCACTAAGCAGTTTGGTGTGTCCCGGGAAAGCTTTTGGCTCACTTTTTGGCTGAACAAATTAACTGGAGCAGGGCAAACCAAA
>TCONS_00046796
agacacacatgaggaagctcgactcagcTTGGCTTGCAGACAGATGAGGACGGTGATTGCCCGTCATACACCTAAAgaaagaacaggGGCATTAAAGACACAACTATAGTGAACGTGATGAAGAAAAAGtatttggaacaaagaggctggataaaaaactgatatgaagatttcagaaattgatgcagcaccacaagtaccatcaccaccaATGACTATGGCAGGATCCTTAAgaacaccatcaagatgcacagatgctgtacattccagtacacctatgaacatttacagtccttgTTCAAGTGCAGTCCGAGATCAAGACAACTTATTGCAACTcgtcatgtctttcacgactgaaaaaaagttttaaaatcatgttacgtcataaagcagcaactgtgcctgattctcacaaatcagcaaaaccaaaacagacgtgatgaaattccagatgtaaacacatttgacctttcTTTGTCCAATTTGATTTGTAAaaacttgaaaatcaactaaacgagcagcccgaacaaatgaagaaactggtagcctactttggaATCATGGGTGTTTTCCACTAAGCAGTTTGGTGTGTCCCGGGAAAGCTTTTGGCTCACTTTTTGGCTGAACAAATTAACTGGAGCAGGGCAAACCAAAATGTGGCCTTTCATGCACTCTCCCTTAGGACTGTCTAGTCAatgtagTGAGGAGAAATGTCCATACCacaccactgataaagaagtggaaaaatgcattacaaggtggcTACAACGTGCTCCTGACAGGGCTGGAGGAAGGAgggaagaagagaaagctaatgtgtcaaatgtctacatcaataatttattttttaaacaacattttaagtgtatt
>TCONS_00046797
aatgtatctgatcaaggGGCATTAAAGACACAACTATAGTGAACGTGATGAAGAAAAAGtatttggaacaaagaggctggataaaaaactgatatgaagatttcagaaattgatgcagcaccacaagtaccatcaccaccaATGACTATGGCAGGATCCTTAAgaacaccatcaagatgcacagatgctgtacattccagtacacctatgaacatttacagtccttgTTCAAGTGCAGTCCGAGATCAAGACAACTTATTGCAACTcgtcatgtctttcacgactgaaaaaaagttttaaaatcatgttacgtcataaagcagcaactgtgcctgattctcacaaatcagcaaaaccaaaacagacgtgatgaaattccagatgtaaacacatttgacctttcTTTGTCCAATTTGATTTGTAAaaacttgaaaatcaactaaacgagcagcccgaacaaatgaagaaactggtaagtttcTTGCTTATTTCtaagtgttttatgtttatttatttatttatttatttatgtgtttttttttgcttcgtaggtagcctactttggaATCATGGGTGTTTTCCACTAAGCAGTTTGGTGTGTCCCGGGAAAGCTTTTGGCTCACTTTTTGGCTGAACAAATTAACTGGAGCAGGGCAAACCAAAATGTGGCCTTTCATGCACTCTCCCTTAGGACTGTCTAGTC

Function

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1903225 negative regulation of endodermal cell differentiation biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046795 False 733 lncRNA 0.38 3 11597090 11598119
TCONS_00046796 False 870 lncRNA 0.40 5 11597090 11598529
TCONS_00046797 True 703 lncRNA 0.38 2 11597292 11598159

Neighbor

gene id symbol gene type direction distance location
XLOC_022807 BX005153.2 coding upstream 30648 11564896 ~ 11566442 (+)
XLOC_022806 NA coding upstream 57375 11539508 ~ 11539715 (+)
XLOC_022805 ackr4b coding upstream 206421 11381400 ~ 11390669 (+)
XLOC_022804 NA coding upstream 250219 11334635 ~ 11346871 (+)
XLOC_022803 prlh2 coding upstream 487003 11105786 ~ 11110087 (+)
XLOC_022809 BX005153.3 coding downstream 15728 11614257 ~ 11614373 (+)
XLOC_022810 BX005153.1 coding downstream 23667 11622196 ~ 11624867 (+)
XLOC_022811 fen1 coding downstream 309951 11908480 ~ 11921184 (+)
XLOC_022812 NA coding downstream 344335 11942864 ~ 11943328 (+)
XLOC_022813 NA coding downstream 358469 11956998 ~ 11958133 (+)
XLOC_022800 CT573414.1 non-coding upstream 779005 10817960 ~ 10818085 (+)
XLOC_022798 NA non-coding upstream 1087628 10417304 ~ 10509462 (+)
XLOC_022814 NA non-coding downstream 456501 12055030 ~ 12061352 (+)

Expression


Co-expression Network