XLOC_022791 (tmem108)


Basic Information

Item Value
gene id XLOC_022791
gene name tmem108
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 9744012 ~ 9873206 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045321
GACCGACACGCACAGTCATTAACCGTCTGATTTCACTCATCCACCTGCTGCCTGCCTGGTGCCTTCATCTATGATCTAAACAGGCTATCCTGTGAATTTGGGGAGGTGGGGCGGTGTTGGACTGGATTCAGATGTTCGCTGGATGGAGGCAGGGGAGGGTTTAACTGACCGCTCGGCTCCGCTCCGCTCATGTGACAGTCTGATACCGTGCGGGAGGCATGTGCGCGATGGACCGGTGACGCGGCGGCTTTAATGAGCCGGTTCTGCTGGAAACAAGAGGATTCGGACTATTCCCCTTTAGAGAACCATGAGCACTGTGGAGGAGGAGCCGGACCACATGATACCATGAAGAGAAGCCTGCAGGTCCTGCCCCACCAGCTGCTGAGCATTCTACTGATTCTGTTTGTGCCAGCTGGGCTGGTGTTCTCCACAGAGGAGCTTCACCCCAGCCAACCCCCTCGGGACCTTGTCTCCATGTCCACGAGCAGCAGAACCCTTTCACCAGGGCTCTTGAGCTGGCAGGAGGGTTCCAGTACTGGGAATCTGCACAACCAGGCGCTGGCCTCTCTAGAAGCCATCCGAAGACCCACTGCTGTTGACTTTTTCCAGACACCGAAGACCACTGTTCCTTCTGCCATAGTTCAGACAACAACAGTAGGGGTCCATCACTTTGCTCCTAGAGAACAGGCACAACCAGGAATCCCCCTCAATAAAGCAGAAGTGCCCGAACTGACCCCTGGAAGCATATTCAGTAGAACAAACTCTAAGGTTTTCAGCACTAGAACCCAAGACCAGAACTTCAGCACTAATACAGATAAGCCGAGTACAATCAGTAGAAAGCCAGTGAACCAATTCGAGCCCTCTGGTTTGCTTCGTACAAATCAAATCAGTACTCCTGGTTTGGTCAGTGGACAGCGAGCCACAAATTCTGGTTCGGGTCATTCTTTTGTCTCAGGGACTGAACATGATGTGGCAGACACTGAAAAGATGAGCAAACCCATTGATCCCATTCAACATCAATCATCACCTTCATCCTTTTCACTCTTCAAAGCCCACAGAAGCCAGAACGTGAACAAGGTGTCTGCGCAACACACCATTACATTGCGTAGTTTGTCGATAACAGAGAATCCCACTCTACCGTTGGACACTGTGGGAGGAGCTTTGGCACAAACTTACATACAGTCTCCTCCTCCAGCTTTAGCCCCACCTTCAAACCACATTAgcactgagagttcaaacactgttGAAGTTGGCACCAATGGAACAACCAACATGACAGTTGAATTTCTTATCTCCCCGACTAATGCCACAGATGTTCTCAACAGCACTGACTCTTTACGGCCTGCAGCTAATGATTCGGACATGTCGGAGGTGCCCTCCACTGATAGTGGGAGCTTCATGAACAGGCAGGTCCCAGCCACCACACAAGGCCCATGGGGATCCGGAAACCAGTCAGGTCCTGCACTAGGTCCTCCTCATGAAAAAAACACCATCTGCCTGGACAAaatggacattgtgtggttgGTTCTTGCCATTAGCGTGCCTGTCTCTACATGCTCCGTGCTGCTTACCGTATGCTGTATGAGGAAAAAGAAGAAGTCTGCTTCTCAGGAGAACAACTTGAGCTACTGGAACGATGCCATCACAATGGATTATTTCACCCGTCATGCTGTGGAGCTCCCACGCGAGATACAATCACTGGAGGCTGAGGAACAAGAGACGTGTCTGCCCCCTAATGGTGACTACAGTGATAGCGGTGTGGTTCTAGTGAACCCGTTTTGCCAAGAGACTCTCTTCATCAACAGAGACAAGGCTTCTGATATCTAAACACATTATATTAAAGAGACAAAATCCCTGACGATTTTTCTGTCCCTTTTGTTTGCTCGCATTTTTAaagaatacatatatatatatctaccaataaatatatataaacataaatgtgGTGAATATTCAGAGActacagtttatatacagtatgaaaCTGGTTTCAAGGAGCTGACAGAATATGAGGAAAAAAGAACAAATGTGATTTACTATGAGCGGGAGCCCCTGCATATTTTTCTGATGTGGATTTTCTACCGACGCTTCATTGTGATAAGGGTTTTTATGtcttttttgaataaaaacaGTGTGGTTGCTCTTATGTTCCAGTGGCTTTGGTGGTGCAGAGTGCTGAGAAACATGTAAGGATGCTTGTGTGACGTTACCCAAAACACTTAATatgattacttaaaaaaaaa
>TCONS_00045322
CGATTAACGGCACAAGCACCCCTGAAAACATCGTTGCGTTTTGTTGTCAGAATTCTGAGGATTTAACGCGGATAAACATCATGTTATGCTACAGACGTTTTTGATAATTTTCTTCATATTTTTTAACAAGCATGAGCACTGTGGAGGAGGAGCCGGACCACATGATACCATGAAGAGAAGCCTGCAGGTCCTGCCCCACCAGCTGCTGATGCAGGCATTCTACTGATTCTGTTTGTGCCAGCTGGGCTGGTGTTCTCCACAGAGGAGCTTCACCCCAGCCAACCCCCTCGGGACCTTGTCTCCATGTCCACGAGCAGCAGAACCCTTTCACCAGGGCTCTTGAGCTGGCAGGAGGGTTCCAGTACTGGGAATCTGCACAACCAGGCGCTGGCCTCTCTAGAAGCCATCCGAAGACCCACTGCTGTTGACTTTTTCCAGACACCGAAGACCACTGTTCCTTCTGCCATAGTTCAGACAACAACAGTAGGGGTCCATCACTTTGCTCCTAGAGAACAGGCACAACCAGGAATCCCCCTCAATAAAGCAGAAGTGCCCGAACTGACCCCTGGAAGCATATTCAGTAGAACAAACTCTAAGGTTTTCAGCACTAGAACCCAAGACCAGAACTTCAGCACTAATACAGATAAGCCGAGTACAATCAGTAGAAAGCCAGTGAACCAATTCGAGCCCTCTGGTTTGCTTCGTACAAATCAAATCAGTACTCCTGGTTTGGTCAGTGGACAGCGAGCCACAAATTCTGGTTCGGGTCATTCTTTTGTCTCAGGGACTGAACATGATGTGGCAGACACTGAAAAGATGAGCAAACCCATTGATCCCATTC

Function

symbol description
tmem108 Predicted to be involved in dendrite extension; postsynaptic density organization; and retrograde axonal transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon; endosome; and postsynaptic density. Orthologous to human TMEM108 (transmembrane protein 108).

GO:

id name namespace
GO:0097106 postsynaptic density organization biological_process
GO:0097484 dendrite extension biological_process
GO:0008090 retrograde axonal transport biological_process
GO:0005769 early endosome cellular_component
GO:0030424 axon cellular_component
GO:0010008 endosome membrane cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-397 Predicted to be involved in dendrite extension; postsynaptic density organization; and retrograde axonal transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon; endosome; and postsynaptic density. Orthologous to human TMEM108 (transmembrane protein 108).

Ensembl:

ensembl_id ENSDARG00000090230

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045321 False 2243 mRNA 0.48 5 9744012 9873206
TCONS_00045322 True 841 processed_transcript 0.49 3 9746292 9866290

Neighbor

gene id symbol gene type direction distance location
XLOC_022790 topbp1 coding upstream 6782 9693951 ~ 9737230 (+)
XLOC_022789 nphp3 coding upstream 60638 9612218 ~ 9683374 (+)
XLOC_022788 GPR17 coding upstream 138692 9604442 ~ 9605320 (+)
XLOC_022787 si:ch211-285f17.1 coding upstream 145556 9372292 ~ 9598456 (+)
XLOC_022786 otud1 coding upstream 444534 9298198 ~ 9299478 (+)
XLOC_022792 cdv3 coding downstream 8013 9881219 ~ 9893794 (+)
XLOC_022793 si:ch211-146l10.8 coding downstream 154696 10027902 ~ 10032784 (+)
XLOC_022794 pou6f2 coding downstream 165959 10039165 ~ 10272212 (+)
XLOC_022795 otulina coding downstream 429749 10302955 ~ 10344556 (+)
XLOC_022796 si:ch211-69l10.4 coding downstream 524659 10397865 ~ 10406797 (+)
XLOC_022785 NA non-coding upstream 462995 9275244 ~ 9281017 (+)
XLOC_022780 NA non-coding upstream 902632 8832054 ~ 8841380 (+)
XLOC_022778 NA non-coding upstream 1448565 8267583 ~ 8295447 (+)
XLOC_022777 NA non-coding upstream 1498933 8243024 ~ 8245079 (+)
XLOC_022770 NA non-coding upstream 2186122 7553299 ~ 7557890 (+)
XLOC_022798 NA non-coding downstream 544098 10417304 ~ 10509462 (+)
XLOC_022799 CT573344.2 non-coding downstream 557320 10430526 ~ 10432439 (+)
XLOC_022800 CT573414.1 non-coding downstream 944754 10817960 ~ 10818085 (+)
XLOC_022804 NA non-coding downstream 1461429 11334635 ~ 11346871 (+)
XLOC_022806 NA non-coding downstream 1666302 11539508 ~ 11539715 (+)

Expression


Co-expression Network