Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00045332 |
| length | 931 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.44 |
| exon number | 3 |
| gene id | XLOC_022795 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007135.7 |
| NCBI id | CM002908.2 |
| chromosome length | 42172926 |
| location | 10302955 ~ 10344556 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:1990108 | protein linear deubiquitination | biological_process |
| GO:0071797 | LUBAC complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004843 | thiol-dependent ubiquitin-specific protease activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-2157 | Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in protein linear deubiquitination. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in alar plate midbrain region; lens; optic tectum; retina; and solid lens vesicle. Human ortholog(s) of this gene implicated in otulipenia. Orthologous to several human genes including YAE1 (YAE1 maturation factor of ABCE1). |
| ensembl_id | ENSDART00000132996 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00045328 | lncRNA | upstream | 32798 | 10237287 ~ 10270299 (+) | False | XLOC_022794 |
| TCONS_00046939 | lncRNA | upstream | 1022080 | 9275244 ~ 9281017 (+) | False | XLOC_022785 |
| TCONS_00046940 | lncRNA | upstream | 1022080 | 9278432 ~ 9281017 (+) | True | XLOC_022785 |
| TCONS_00046938 | lncRNA | upstream | 1461717 | 8832054 ~ 8841380 (+) | True | XLOC_022780 |
| TCONS_00046937 | lncRNA | upstream | 2007650 | 8267852 ~ 8295447 (+) | True | XLOC_022778 |
| TCONS_00045338 | lncRNA | downstream | 98286 | 10417304 ~ 10464879 (+) | False | XLOC_022798 |
| TCONS_00046941 | lncRNA | downstream | 98287 | 10417305 ~ 10481772 (+) | False | XLOC_022798 |
| TCONS_00045339 | lncRNA | downstream | 98347 | 10417365 ~ 10509462 (+) | False | XLOC_022798 |
| TCONS_00046942 | lncRNA | downstream | 99555 | 10418573 ~ 10481772 (+) | True | XLOC_022798 |
| TCONS_00045340 | lncRNA | downstream | 111508 | 10430526 ~ 10432439 (+) | True | XLOC_022799 |
| TCONS_00045326 | mRNA | upstream | 30885 | 10039165 ~ 10272212 (+) | False | XLOC_022794 |
| TCONS_00045327 | mRNA | upstream | 59843 | 10202718 ~ 10243254 (+) | False | XLOC_022794 |
| TCONS_00045324 | mRNA | upstream | 270313 | 10027902 ~ 10032784 (+) | False | XLOC_022793 |
| TCONS_00045325 | mRNA | upstream | 272281 | 10027924 ~ 10030816 (+) | True | XLOC_022793 |
| TCONS_00045323 | mRNA | upstream | 409303 | 9881219 ~ 9893794 (+) | True | XLOC_022792 |
| TCONS_00045335 | mRNA | downstream | 78847 | 10397865 ~ 10406797 (+) | True | XLOC_022796 |
| TCONS_00045336 | mRNA | downstream | 94466 | 10413484 ~ 10416048 (+) | False | XLOC_022797 |
| TCONS_00045337 | mRNA | downstream | 95010 | 10414028 ~ 10416284 (+) | True | XLOC_022797 |
| TCONS_00045342 | mRNA | downstream | 579653 | 10898671 ~ 10901351 (+) | True | XLOC_022801 |
| TCONS_00045343 | mRNA | downstream | 764128 | 11083146 ~ 11087183 (+) | False | XLOC_022802 |
| TCONS_00045329 | other | upstream | 32798 | 10237289 ~ 10270299 (+) | True | XLOC_022794 |
| TCONS_00045322 | other | upstream | 436807 | 9746292 ~ 9866290 (+) | True | XLOC_022791 |
| TCONS_00045274 | other | upstream | 3720929 | 6582052 ~ 6582168 (+) | True | XLOC_022766 |
| TCONS_00045273 | other | upstream | 3897781 | 6405194 ~ 6405316 (+) | True | XLOC_022765 |
| TCONS_00045270 | other | upstream | 4239312 | 6063671 ~ 6063785 (+) | True | XLOC_022760 |
| TCONS_00045341 | other | downstream | 498942 | 10817960 ~ 10818085 (+) | True | XLOC_022800 |
| TCONS_00045351 | other | downstream | 1245878 | 11564896 ~ 11566442 (+) | True | XLOC_022807 |
| TCONS_00045352 | other | downstream | 1295239 | 11614257 ~ 11614373 (+) | True | XLOC_022809 |
| TCONS_00045353 | other | downstream | 1303178 | 11622196 ~ 11623922 (+) | False | XLOC_022810 |
| TCONS_00045354 | other | downstream | 1303178 | 11622196 ~ 11624867 (+) | False | XLOC_022810 |
