RNA id: TCONS_00046941


Basic Information

Item Value
RNA id TCONS_00046941
length 442
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id XLOC_022798
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 10417304 ~ 10509462 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGACTGTATGACTGTACGCAGCGCGTGCCGCGGAGCGCGTGCTCTGAGCACATGGAAGAGGGCTCGAGACGAAGTATCCAAAGAATAACTCCACACCTGAAAGGGAATATCTGCAGAAACCGAATCAATTCTGGAACAAAAGAGGACCTTCAGAACAGCTGCCGGCCTGCCTGTCGTTCTCTTGCTGGAAGCCTGAAACCAGAGCTAGGGGTGAATGccaaacttttcaggaaaagaCCTCCACATTCTGGCCCCCCGTGAGCTGACAGCTCTTTGCCATCAAAGTCAACAATACTGCTTTGCTGCAAGGAGATGAAGATCGGCTGTTGACTGCGGAcagctgggtttcacacaatggCATAAAGATGCGGAAAAGGACTTTGACCCCATTGTCACAGTCCACTCTGCTTTGCATCCCAAGCCTATTGTCGTATGCGGCGA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0030154 cell differentiation biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045328 lncRNA upstream 147006 10237287 ~ 10270299 (+) False XLOC_022794
TCONS_00046939 lncRNA upstream 1136288 9275244 ~ 9281017 (+) False XLOC_022785
TCONS_00046940 lncRNA upstream 1136288 9278432 ~ 9281017 (+) True XLOC_022785
TCONS_00046938 lncRNA upstream 1575925 8832054 ~ 8841380 (+) True XLOC_022780
TCONS_00046937 lncRNA upstream 2121858 8267852 ~ 8295447 (+) True XLOC_022778
TCONS_00045344 lncRNA downstream 601390 11083162 ~ 11087034 (+) True XLOC_022802
TCONS_00046943 lncRNA downstream 852863 11334635 ~ 11346451 (+) False XLOC_022804
TCONS_00045349 lncRNA downstream 853045 11334817 ~ 11337817 (+) True XLOC_022804
TCONS_00046794 lncRNA downstream 1057736 11539508 ~ 11539715 (+) True XLOC_022806
TCONS_00046795 lncRNA downstream 1115318 11597090 ~ 11598119 (+) False XLOC_022808
TCONS_00045337 mRNA upstream 1021 10414028 ~ 10416284 (+) True XLOC_022797
TCONS_00045336 mRNA upstream 1257 10413484 ~ 10416048 (+) False XLOC_022797
TCONS_00045335 mRNA upstream 10508 10397865 ~ 10406797 (+) True XLOC_022796
TCONS_00045334 mRNA upstream 72749 10310577 ~ 10344556 (+) True XLOC_022795
TCONS_00045333 mRNA upstream 107928 10303125 ~ 10309377 (+) False XLOC_022795
TCONS_00045342 mRNA downstream 416899 10898671 ~ 10901351 (+) True XLOC_022801
TCONS_00045343 mRNA downstream 601374 11083146 ~ 11087183 (+) False XLOC_022802
TCONS_00045345 mRNA downstream 624014 11105786 ~ 11110087 (+) False XLOC_022803
TCONS_00045346 mRNA downstream 624630 11106402 ~ 11110087 (+) True XLOC_022803
TCONS_00045347 mRNA downstream 852961 11334733 ~ 11346871 (+) False XLOC_022804
TCONS_00045332 other upstream 98287 10303097 ~ 10319018 (+) False XLOC_022795
TCONS_00045329 other upstream 147006 10237289 ~ 10270299 (+) True XLOC_022794
TCONS_00045322 other upstream 551015 9746292 ~ 9866290 (+) True XLOC_022791
TCONS_00045274 other upstream 3835137 6582052 ~ 6582168 (+) True XLOC_022766
TCONS_00045273 other upstream 4011989 6405194 ~ 6405316 (+) True XLOC_022765
TCONS_00045341 other downstream 336188 10817960 ~ 10818085 (+) True XLOC_022800
TCONS_00045351 other downstream 1083124 11564896 ~ 11566442 (+) True XLOC_022807
TCONS_00045352 other downstream 1132485 11614257 ~ 11614373 (+) True XLOC_022809
TCONS_00045353 other downstream 1140424 11622196 ~ 11623922 (+) False XLOC_022810
TCONS_00045354 other downstream 1140424 11622196 ~ 11624867 (+) False XLOC_022810

Expression Profile

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