RNA id: TCONS_00046934


Basic Information

Item Value
RNA id TCONS_00046934
length 1563
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_022778
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 8267583 ~ 8295447 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGTATGTATGAGCCAGCACGGAGGACAGCGATCCCCACTCCCGGGAACAATCCGTAGCCTGTGGGAGTTTTTCGATGCCAATTGTGATACACAATACGGGGTCACATTAGTTAGAAATATATTGTGGGGTCACCGATGGTGCCTGTGGGGCTATTGCGCTCTCCCAgtacccctctctctctctttcattcccTCCCGTTATCCTGATTTGTCTAGTTGAGCCCGTGCATAACTGTCTGCACTGCTACCTCTCATAACCTGTAAGCGCAGCCTCGGTATATTTAAACGTACAGCGGGATCGGGCGCAGTCAGAAGGGCAGCGGCAGCAGACGTTCCGGCTGTCAGGAGGCATCGGGCAGATTGCGTCTCGGGACGGGACGCGGGACGACTGTGTGACAGGAAGGAGAAACGCAGGCCTGACGCCACAAGAGGCACATATCAGCTGCGGCGGCCGCATGCTTGTGATTGCTCCGTATCTCGTTCTGTCTCCGagcgaaagagagagagagagagatcaagagggagagaaagagagacggaAAGATGGCTGAGGTGACAGGTCCACCCTTAGCCCACTCAGTTGATCTATATGAGCTCAACTTTATTGCCAATTTCAGCTTTGGGACAGCTGAGGCTCTGAccatcataaacacacacacacacatacacacacacacacacacacacacacacacacacacacacacacaaagaggaaATAAACGTGTTGGTGCAGACAGACATGTCCACAAAGGGGGTGTACACATTTCAACACAtctgcacccagaggaaacttttATTGCTCAGCGGTTGCTCTTTCCTAGCTCATGAGGCTTAAGGGAGCACTCATTTAAGTTTCATTTAAATCTCTCCATGTTGTCTCAAACACCACTTCTAGTTGCTGTAGAACATTTTAAAGGCCTGCTCACACCAAGGATGTTAAGCATACAAAGACAACTACAGTATAACCATAACTATAGTGTTATTATTCTTAACATGGTAACCCTTTACAACAAGGTTGTGTTAGTTACTGTGAGAttaagcatttactaacatgaaaaaacattAGACATAGCATTTAGTAAAGTATTtgctcatgttagttaacgtaAATGAAATGACATAATTAGTTAATGATAATGacaattgttcattgtttgtttatcttaactcgcagtgcattaactaatggtagCAAGCATTTGGATGattataatgcattagtaaatgttgaactgattaataaatgctgtacaagtattgttcataattagtttgtgtttgtaaatacattaaccTATGAAACCTGTAAAGTATGAGGCTTAAAATGATGTGTTATCTTTGATATCTGCTgtttaaatgctatttaaaatgttagtggaaatatatacagttgaagtcagaattattagcccccctttgattttttttttcttttttaaatacttttaaaatgatgtttaacagagcaaggaaattttcaaagtatgtctgataatatttttttcttctggagaaagtcttatttgttttatttcggctagaatgaaagcagttttta

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043009 chordate embryonic development biological_process
GO:0055016 hypochord development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0048934 peripheral nervous system neuron differentiation biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0060284 regulation of cell development biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0060322 head development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046933 lncRNA upstream 22504 8243024 ~ 8245079 (+) True XLOC_022777
TCONS_00046791 lncRNA upstream 709693 7553299 ~ 7557890 (+) False XLOC_022770
TCONS_00046793 lncRNA upstream 709693 7554629 ~ 7557890 (+) False XLOC_022770
TCONS_00046792 lncRNA upstream 709693 7554629 ~ 7557890 (+) True XLOC_022770
TCONS_00046932 lncRNA upstream 1867798 6389435 ~ 6399785 (+) True XLOC_022764
TCONS_00046938 lncRNA downstream 558440 8832054 ~ 8841380 (+) True XLOC_022780
TCONS_00046939 lncRNA downstream 1001630 9275244 ~ 9281017 (+) False XLOC_022785
TCONS_00046940 lncRNA downstream 1004818 9278432 ~ 9281017 (+) True XLOC_022785
TCONS_00045328 lncRNA downstream 1963673 10237287 ~ 10270299 (+) False XLOC_022794
TCONS_00045338 lncRNA downstream 2143690 10417304 ~ 10464879 (+) False XLOC_022798
TCONS_00045295 mRNA upstream 331774 7861373 ~ 7935809 (+) False XLOC_022776
TCONS_00045296 mRNA upstream 357149 7884880 ~ 7910434 (+) True XLOC_022776
TCONS_00045293 mRNA upstream 413354 7828097 ~ 7854229 (+) False XLOC_022775
TCONS_00045294 mRNA upstream 413666 7828613 ~ 7853917 (+) True XLOC_022775
TCONS_00045292 mRNA upstream 450712 7800486 ~ 7816871 (+) True XLOC_022774
TCONS_00045297 mRNA downstream 462883 8736497 ~ 8741830 (+) True XLOC_022779
TCONS_00045298 mRNA downstream 576190 8849804 ~ 8890249 (+) False XLOC_022781
TCONS_00045299 mRNA downstream 576190 8849804 ~ 8892229 (+) True XLOC_022781
TCONS_00045300 mRNA downstream 630521 8904135 ~ 8973300 (+) False XLOC_022782
TCONS_00045301 mRNA downstream 631127 8904741 ~ 8968874 (+) True XLOC_022782
TCONS_00045274 other upstream 1685415 6582052 ~ 6582168 (+) True XLOC_022766
TCONS_00045273 other upstream 1862267 6405194 ~ 6405316 (+) True XLOC_022765
TCONS_00045270 other upstream 2203798 6063671 ~ 6063785 (+) True XLOC_022760
TCONS_00045239 other upstream 4111184 4154959 ~ 4156399 (+) True XLOC_022744
TCONS_00045238 other upstream 4208010 4059456 ~ 4059573 (+) True XLOC_022743
TCONS_00045322 other downstream 1472678 9746292 ~ 9866290 (+) True XLOC_022791
TCONS_00045329 other downstream 1963675 10237289 ~ 10270299 (+) True XLOC_022794
TCONS_00045332 other downstream 2029483 10303097 ~ 10319018 (+) False XLOC_022795
TCONS_00045341 other downstream 2544346 10817960 ~ 10818085 (+) True XLOC_022800
TCONS_00045351 other downstream 3291282 11564896 ~ 11566442 (+) True XLOC_022807

Expression Profile

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