Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00045276 |
| length | 945 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 3 |
| gene id | XLOC_022768 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007135.7 |
| NCBI id | CM002908.2 |
| chromosome length | 42172926 |
| location | 7322116 ~ 7330156 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0000724 | double-strand break repair via homologous recombination | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0005657 | replication fork | cellular_component |
| GO:0033063 | Rad51B-Rad51C-Rad51D-XRCC2 complex | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0008094 | DNA-dependent ATPase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-121029-1 | Predicted to enable ATP binding activity; ATPase, acting on DNA; and DNA binding activity. Predicted to act upstream of or within double-strand break repair via homologous recombination. Predicted to be located in nucleus and replication fork. Predicted to be part of Rad51B-Rad51C-Rad51D-XRCC2 complex. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group U; pancreatic cancer; primary ovarian insufficiency 17; and spermatogenic failure 50. Orthologous to human XRCC2 (X-ray repair cross complementing 2). |
| ensembl_id | ENSDART00000005804 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00046932 | lncRNA | upstream | 922331 | 6389435 ~ 6399785 (+) | True | XLOC_022764 |
| TCONS_00046921 | lncRNA | upstream | 1232863 | 6082660 ~ 6089253 (+) | False | XLOC_022761 |
| TCONS_00046791 | lncRNA | downstream | 223143 | 7553299 ~ 7557890 (+) | False | XLOC_022770 |
| TCONS_00046793 | lncRNA | downstream | 224473 | 7554629 ~ 7557890 (+) | False | XLOC_022770 |
| TCONS_00046792 | lncRNA | downstream | 224473 | 7554629 ~ 7557890 (+) | True | XLOC_022770 |
| TCONS_00046933 | lncRNA | downstream | 912868 | 8243024 ~ 8245079 (+) | True | XLOC_022777 |
| TCONS_00046934 | lncRNA | downstream | 937427 | 8267583 ~ 8273614 (+) | False | XLOC_022778 |
| TCONS_00045275 | mRNA | upstream | 163815 | 7153628 ~ 7158301 (+) | True | XLOC_022767 |
| TCONS_00045272 | mRNA | upstream | 962846 | 6353394 ~ 6359270 (+) | True | XLOC_022763 |
| TCONS_00045271 | mRNA | upstream | 1203767 | 6107901 ~ 6118349 (+) | True | XLOC_022762 |
| TCONS_00045269 | mRNA | upstream | 1309330 | 5935469 ~ 6012786 (+) | True | XLOC_022759 |
| TCONS_00045268 | mRNA | upstream | 1309577 | 5935377 ~ 6012539 (+) | False | XLOC_022759 |
| TCONS_00045278 | mRNA | downstream | 6255 | 7336411 ~ 7465271 (+) | False | XLOC_022769 |
| TCONS_00045279 | mRNA | downstream | 6651 | 7336807 ~ 7549610 (+) | False | XLOC_022769 |
| TCONS_00045280 | mRNA | downstream | 165789 | 7495945 ~ 7500562 (+) | False | XLOC_022769 |
| TCONS_00045282 | mRNA | downstream | 165791 | 7495947 ~ 7547864 (+) | False | XLOC_022769 |
| TCONS_00045281 | mRNA | downstream | 165791 | 7495947 ~ 7547864 (+) | False | XLOC_022769 |
| TCONS_00045274 | other | upstream | 739948 | 6582052 ~ 6582168 (+) | True | XLOC_022766 |
| TCONS_00045273 | other | upstream | 916800 | 6405194 ~ 6405316 (+) | True | XLOC_022765 |
| TCONS_00045270 | other | upstream | 1258331 | 6063671 ~ 6063785 (+) | True | XLOC_022760 |
| TCONS_00045239 | other | upstream | 3165717 | 4154959 ~ 4156399 (+) | True | XLOC_022744 |
| TCONS_00045238 | other | upstream | 3262543 | 4059456 ~ 4059573 (+) | True | XLOC_022743 |
| TCONS_00045322 | other | downstream | 2416136 | 9746292 ~ 9866290 (+) | True | XLOC_022791 |
| TCONS_00045329 | other | downstream | 2907133 | 10237289 ~ 10270299 (+) | True | XLOC_022794 |
| TCONS_00045332 | other | downstream | 2972941 | 10303097 ~ 10319018 (+) | False | XLOC_022795 |
| TCONS_00045341 | other | downstream | 3487804 | 10817960 ~ 10818085 (+) | True | XLOC_022800 |
| TCONS_00045351 | other | downstream | 4234740 | 11564896 ~ 11566442 (+) | True | XLOC_022807 |
