RNA id: TCONS_00045278


Basic Information

Item Value
RNA id TCONS_00045278
length 2743
RNA type mRNA
GC content 0.49
exon number 13
gene id XLOC_022769
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 7336411 ~ 7549610 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAATGTGCTATTATGTCTTTAACATCAACATATGCTAAAATGATTTAGTCTCTTCTCGTTTTCATGTTTCCCTGCAGTTTTCAGTGTAAAGCTTGTTTCTGGTTCGCTCTTTACGACCTCAGAGAAAGTTAAATTACAATATATCCTCGAACATTCAGTCATATTCTGGGACGTTATAAAAAGCTAAAAGCAATGACATTTAAGAAACGTAGACCGAacgttaaaaatataaaacatttactgAGAGATAACACATTAAAACAGCGTCCAAAAGGAAGAAATTTCGTCTTTATACGCGGACATAGGCGACGTGTAGTCATTCCAGCTCATTTTCCAAAGTCGACTTCCGCGTTTTACAATCCACCGCTGACGACTGAGGAGACTTTTTGCCTCGAGTATGTCCTCATGTATCGCTCCGCGGGGTCAgtgagacttttaaaaaatatctccatgcagtttttaacagaaataacgtCCACGTTTATCACCCCATACATCATACTCTCGGTTTATAGATGTTCTGCACGAGTTATGCTCCATTTTAAACGACAACACTGTCTTAAACCTGAAAGTGGGTCTATTTGTCCGTTGCAGTGACAGGCAGTGTTTCGGTCTCTCTTAAACATGGCCACCATGATGGAGTAAACGCTACAACTTTAAAATTCATATAATCGAGGAAAACTATGCTTCTTTCGCCCAAATGAGGAATGTTTCGACCTGAAATATCGCACCAAACGCTTAATCCACATGAGAGCTTTGGGAAAAGTTTCTTCTTGGATTACATTCTGAATTAAGTTGGCTGGAAGCTGGAAAGGAAAGAAGAGAATTGCATCAATTCCAATGTCATCAGAGGAAAAGAGTCTGGAGCCCTCTGAGCAAGGACCATCTCCTCCCCTGAGCAGTGCTGGGGCCACACCCTCAGGGAGCCCGGCCCCCTTAGACAGACGCCCGCGGGGCCGGCCACGCAAGGATGCTTCCTCTGTCACAGTCACACCCAAGTCCAGAAGAAAGTCGCGTAGTCGAGGTTGTGTACAGGCCGATGATGAGGACAGCATGGATGCCACTGATGTCACACCAACTCCAGACATTGAAATCACACCAGAGATTGATGTGGTGGAGCCAGAAACCGACGATGAATTCCCTGAGCCGCTGGATCTCAGCCCCAGAGACGAAAGGCCTCTGTCACCGCTCTTTCAGCGCTCCGTCTCAGAAGACTCCGCTGGCTCGTCCGCTTCCACCACCCGAAAAGCCAAAACTAGAGAAAAGCTCTGTGCCTTCTGCTACTGTGGAGAAAAGAGTCTCTTGGGTCAGGGAGAGTTAAAACTATTTGGACCCACGCCTGGTTACGTCCCCCTGCACATCCGGAACCGCCGCGGCAGCTCAGAGAAGGACGACGATTACCATGACGACGACAATGATTTCGATGACAATGACAACAACCGCAGCCCAGGGCATCGCGGGAGTGGCCTAAAAAAGGTCAGTTCTCCAGACAGCGGCCTGCACTCAACCTCTGCTCCTGGTAGTACAGACCCTGCTGCGGAGGAGCCTGGACGCAAGTTCTGGGATGAACTGGGCCAAATAGGCCTTCCTGATGAAATCAatgttgcatttttatttgacCCCACTGGCCAGTGTTGTGCTCACCTGCGATGTGCAGCCTGGTCGGAGGGTGTATGCCGTGGAGAGGGACAGTCGCTGCTGTATGTCGACAAAGCAATTGACTCAGGGAGCACAGAGTGCTGTGCATACTGTAAGCGCCTTGGAGCATCCATAAAGTGCTGTGAGGAGAGCTGCGGGCGCTCTTTTCATTACCCCTGTGCAGCTGCTGCCGGAACCTTCCAGGACATAAAGACATACACTCTCCTGTGCCCGGATTACATCCAACAAGCCCTCGTCCGATCGAAAGATGGTGTGAAGTGTCTGGTGTGTGACAGTTCTGGAGACTTACTCGATCAGCTCTTTTGCTGCACATGTGGTCAGCATTACCATGGGACCTGTCTGGATGTCACTGTCACCCCGCTGAAGAGGGCTGGCTGGCAGTGTCCGGAGTGCAAAGTTTGCCTCTCATGCAAAAACCCAGGGGACGACAGCAAGATGCTGGTGTGTGACATGTGTGATAAAGGGTATCATACCTTCTGCCTGCAGCCCATCATGGAAACAATACCCACCAATGGCTGGAGGTGCAAGAACTGCCGGACATGTGCTCAGTGTGGCATGAGGCCTAACGGCCAGTGGTCGTCTAATGGTGTAATGTGTGAAGGATGTCAACAACAGCATGAATCAGCGCTTCTCTGCCTCATCTGTGGGCAGAGTCAGGACTCCGGCAGCCCTGCGGACAAACACACATGCTGCACATGCAAGAGATGGGTTCACGTGGACTGTGTGAGGCAGGAGGGCACTAACCCTGACACCCAGCTTCAGGATGGGTACACCTGCAGAGCATGTAAGCAGGTGGAGGAGGAGACCAGACACAGTCAACCTGTCAGCAGCCAGGAGGCTTCTCTCACTGACCCAGAGCCAGCCGAAGATGTCTTCATGTCTGTAGAGGAAGTACAGGAGGCTGAGGGGGAAGTGGTGTTGGAGCCAGAGCCCAGTGCAAGTCCACTTGCTACACTGCCAGACAATTTTCTCTCCTGTAAGTCTTTCTGTCTTAGTCAACTCTTTCAGTCGATTACCCATGTTCTGTATTGGTGTTTATTTGGCACAGAGTCTTTAGATTTGTGTTGTATTTGCAGCTACTGA

Function

GO:

id name namespace
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0044666 MLL3/4 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0042800 histone methyltransferase activity (H3-K4 specific) molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080520-3 Predicted to enable histone binding activity; histone methyltransferase activity (H3-K4 specific); and transcription coactivator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin organization and methylation. Predicted to be located in nucleus. Predicted to be part of MLL3/4 complex. Human ortholog(s) of this gene implicated in Klatskin's tumor; Kleefstra syndrome 2; esophagus squamous cell carcinoma; and squamous cell carcinoma. Orthologous to human KMT2C (lysine methyltransferase 2C).

Ensembl:

ensembl_id ENSDART00000191170

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046932 lncRNA upstream 936626 6389435 ~ 6399785 (+) True XLOC_022764
TCONS_00046921 lncRNA upstream 1247158 6082660 ~ 6089253 (+) False XLOC_022761
TCONS_00046791 lncRNA downstream 88028 7553299 ~ 7557890 (+) False XLOC_022770
TCONS_00046793 lncRNA downstream 89358 7554629 ~ 7557890 (+) False XLOC_022770
TCONS_00046792 lncRNA downstream 89358 7554629 ~ 7557890 (+) True XLOC_022770
TCONS_00046933 lncRNA downstream 777753 8243024 ~ 8245079 (+) True XLOC_022777
TCONS_00046934 lncRNA downstream 802312 8267583 ~ 8273614 (+) False XLOC_022778
TCONS_00045276 mRNA upstream 6255 7322116 ~ 7330156 (+) False XLOC_022768
TCONS_00045277 mRNA upstream 6255 7323894 ~ 7330156 (+) True XLOC_022768
TCONS_00045275 mRNA upstream 178110 7153628 ~ 7158301 (+) True XLOC_022767
TCONS_00045272 mRNA upstream 977141 6353394 ~ 6359270 (+) True XLOC_022763
TCONS_00045271 mRNA upstream 1218062 6107901 ~ 6118349 (+) True XLOC_022762
TCONS_00045280 mRNA downstream 30674 7495945 ~ 7500562 (+) False XLOC_022769
TCONS_00045282 mRNA downstream 30676 7495947 ~ 7547864 (+) False XLOC_022769
TCONS_00045281 mRNA downstream 30676 7495947 ~ 7547864 (+) False XLOC_022769
TCONS_00045283 mRNA downstream 70770 7536041 ~ 7547864 (+) True XLOC_022769
TCONS_00045284 mRNA downstream 166526 7631797 ~ 7668109 (+) False XLOC_022771
TCONS_00045274 other upstream 754243 6582052 ~ 6582168 (+) True XLOC_022766
TCONS_00045273 other upstream 931095 6405194 ~ 6405316 (+) True XLOC_022765
TCONS_00045270 other upstream 1272626 6063671 ~ 6063785 (+) True XLOC_022760
TCONS_00045239 other upstream 3180012 4154959 ~ 4156399 (+) True XLOC_022744
TCONS_00045238 other upstream 3276838 4059456 ~ 4059573 (+) True XLOC_022743
TCONS_00045322 other downstream 2281021 9746292 ~ 9866290 (+) True XLOC_022791
TCONS_00045329 other downstream 2772018 10237289 ~ 10270299 (+) True XLOC_022794
TCONS_00045332 other downstream 2837826 10303097 ~ 10319018 (+) False XLOC_022795
TCONS_00045341 other downstream 3352689 10817960 ~ 10818085 (+) True XLOC_022800
TCONS_00045351 other downstream 4099625 11564896 ~ 11566442 (+) True XLOC_022807

Expression Profile

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