XLOC_022755 (si:ch211-157j23.2)


Basic Information

Item Value
gene id XLOC_022755
gene name si:ch211-157j23.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 5826005 ~ 5838324 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045259
AGTTTATGGAACATGTACTTCAGTTTTAAGCTGATGTGAACTTCTCATAGGACAACAATAGACTTAGCCATGGTCATACCttcaacaaacaaatcaaatccACAAGGTAATCCCCAGTTTATATGCGTTATTTTGGGTTGTGTTTTTAgatattggtcatttttgtgcTTTATCAGTTTCCAGGATTGGACTAAAAGTGTTTCTACTGGCATGTCTTCTATCTACCTCATCTTATTTGTTTCTATGGAGATTGATTGGTGGGAGCAAAGTTATACTATTTAAAGCCCCCAGGCCCAAACCAGTTTCCAGATATTTTAATTCTTCATACACAATTTCCGCACTCGACATGGGAATCAGTGAAGAAGAGTGGGAAAGACTACAGAAGGCTCTGGAATGGCCCAGCCCAGATCAAGAAATCACTGAGCTGAGTGAAAGCACAAGTCCAGACCACTCAACATTCACTATTGTGGGACTCAATCAGAATTACAGCGTGGGAGAAAAGATCCTGGTTACTATCACTTCCAGAGACCACAACAATAAACTGAAAAGATACGGAGGAGATTTTTTCAAAGTTAAGCTGTTTAATTCAGAGCTAAagGCGAGTGTGTATGGGGAGGTTGTGGATCATCGTAACGGGACTTACTCTGCTTCTCTTCTTCTGCCCTGGGAAGGTCAGGCACAAGTTTCTGTTCGTCTAGAGCACTCCAGTGAGGTTGTGCAGATTCTGAAAAAATACAGGGAGTCGTCATTCACACGCAGCCACTATAACGGACACTTTGAAGGACCAGGACCCAACAAAACCAGGATCAGTGAAGTAGTACCATGTAACCTTAAGTGGGGTGGAAATGGGAGCTGGATTAAAGGCAACTGCTGCTGCGAGTATAAGGATATAAAAACAGGGACGGTGTGGCACTGTGAGAGACCTAAGAAACTTTCTTGTGACAGATTGGTTCATCACTCAAGAGGAGGTCTGGAAAGTCCATTAAATCATTTTGAGGAACAATTTTTCACAAAcatattaataaatgttggtATTAGCGGAGACACACAATTAATCAACGTTCTTCCCAAAACAACAGACAATGACAGAACGGAGAGATGCAGACCTGGTCTGACGACACCAGTACCTGCAGGTTTCTATCTGAATGATGTCTGGAAGTCTTTTGTGTGCAAAACCCAACAGTTCAATTCTACAAAAACTGGAAATTGCCTTAAAAACAAGATTGTCTATTTGATGGGAGACTCCACCACAAGACAGTGGTTTGAGTTTTTAGAGAGAAAGgtaTAA
>TCONS_00045260
AATTCTTCATACACAATTTCCGCACTCGACATGGGAATCAGTGAAGAAGAGTGGGAAAGACTACAGAAGGCTCTGGAATGGCCCAGCCCAGATCAAGAAATCACTGAGCTGAGTGAAAGCACAAGTCCAGACCACTCAACATTCACTATTGTGGGACTCAATCAGAATTACAGCGTGGGAGAAAAGATCCTGGTTACTATCACTTCCAGAGACCACAACAATAAACTGAAAAGATACGGAGGAGATTTTTTCAAAGTTAAGCTGTTTAATTCAGAGCTAAagGCGAGTGTGTATGGGGAGGTTGTGGATCATCGTAACGGGACTTACTCTGCTTCTCTTCTTCTGCCCTGGGAAGGTCAGGCACAAGTTTCTGTTCGTCTAGAGCACTCCAGTGAGGTTGTGCAGATTCTGAAAAAATACAGGGAGTCGTCATTCACACGCAGCCACTATAACGGACACTTTGAAGGACCAGGACCCAACAAAACCAGGATCAGTGAAGTAGTACCATGTAACCTTAAGTGGGGTGGAAATGGGAGCTGGATTAAAGGCAACTGCTGCTGCGAGTATAAGGATATAAAAACAGGGACGGTGTGGCACTGTGAGAGACCTAAGAAACTTTCTTGTGACAGATTGGTTCATCACTCAAGAGGAGGTCTGGAAAGTCCATTAAATCATTTTGAGGAACAATTTTTCACAAAcatattaataaatgttggtATTAGCGGAGACACACAATTAATCAACGTTCTTCCCAAAACAACAGACAATGGTATAACGGAGAGATGCAGACCTGGTCTGACGACACCAGTACCTGCAGGTTTCTATCTGAATGATGTCTGGAAGTCTTTTGTGTGCAAAACCCAACAGTTCAATTCTACAAAAACTGGAAATTGCCTTAAAAACAAGATTGTCTATTTGATGGGAGACTCCACCACAAGACAGTGGTTTGAGTTTTTAGAGAGAAAGGTGCCAGgtaTAAAAAGGATGGACCTCCACACTCCTCCTACAGGAGGACCCCTGATGGCTGTTGAGTTGACAAACAATATAATAGTTCACTGGGGGCCACACGGAGTTCCTCTGCGCTTTACTAAAATGCTGATCACTGATCTGCATTACATCAGTAATGATATTGATGAAATAGCTGGGGGTTCTCATGCAGTGATCGTCTTTACAATTGCTGCTCACCTGGTTTTTCACCCTCTAACATTCTATGTGCACGAAGTGGCCAAAATTCGTCAGTCTGTCGTTTCACTGCTGAGCCGAGCACCAGAGACTCTCGTCATCATCAAATCTGGAAATACTGCAGGACAAAAGGACATTTTTCAAAGTGACTGGTACGCGATGCAGCTGAACACAGTGATGCAGGAGATGTTCAGAGATATTGATGCCGTAATCTACTTCGATGTCTGGCAGATGACTTCATGTCACTACCTGCACGACGATGTTCACCCAGGTTATGTGGTTGTCGAAAATGAAGTTGATATTTTGCTGTCGTACGTTTGTCCTTCGTGactaataaatattattgtttttgctttgttaataAACCATGGAACTTGGGAAAACA
>TCONS_00046919
TATAATAGTTCACTGGGGGCCACACGGAGTTCCTCTGCGCTTTACTAAAATGCTGATCACTGATCTGCATTACATCAGTAATGATATTGATGAAATAGCTGGGGGTTCTCATGCAGTGATCGTCTTTACAATTGCTGCTCACCTGGTTTTTCACCCTCTAACATTCTATGTGCACGAAGTGGCCAAAATTCGTCAGTCTGTCGTTTCACTGCTGAGCCGAGCACCAGAGACTCTCGTCATCATCAAATCTGGAAATACTGCAGGACAAAAGGACATTTTTCAAAGTGACTGGTACGCGATGCAGCTGAACACAGTGATGCAGGAGATGTTCAGAGATATTGATGCCGTAATCTACTTCGATGTCTGGCAGATGACTTCATGTCACTACCTGCACGACGATGTTCACCCAGGTTATGTGGTTGTCGAAAATGAAGTTGATATTTTGCTGTCGTACGTTTGTCCTTCGTGactaataaatattattgtttttgctttgttaataAACCATGGAACTTGGGAAAACAG

Function

symbol description
si:ch211-157j23.2 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5686 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000095245

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045259 False 1288 mRNA 0.41 6 5826005 5836691
TCONS_00045260 False 1567 mRNA 0.43 6 5829265 5838323
TCONS_00046919 True 525 lncRNA 0.43 2 5836756 5838324

Neighbor

gene id symbol gene type direction distance location
XLOC_022754 si:ch211-157j23.3 coding upstream 1537 5811350 ~ 5824468 (+)
XLOC_022753 si:ch211-157j23.2 coding upstream 15982 5799764 ~ 5810023 (+)
XLOC_022752 si:ch211-157j23.3 coding upstream 27581 5789582 ~ 5798424 (+)
XLOC_022751 plod2 coding upstream 511298 5237709 ~ 5314707 (+)
XLOC_022750 si:ch73-206p6.1 coding upstream 611065 5208171 ~ 5214940 (+)
XLOC_022756 trpc1 coding downstream 1934 5840258 ~ 5869622 (+)
XLOC_022757 mastl coding downstream 54810 5893134 ~ 5908241 (+)
XLOC_022758 pimr64 coding downstream 74311 5912635 ~ 5918755 (+)
XLOC_022759 abi1a coding downstream 97053 5935377 ~ 6012786 (+)
XLOC_022760 CR385039.1 coding downstream 225347 6063671 ~ 6063785 (+)
XLOC_022748 NA non-coding upstream 858756 4960973 ~ 4967249 (+)
XLOC_022747 NA non-coding upstream 1317415 4504746 ~ 4508590 (+)
XLOC_022744 CU462914.1 non-coding upstream 1669606 4154959 ~ 4156399 (+)
XLOC_022743 CT583636.1 non-coding upstream 1766432 4059456 ~ 4059573 (+)
XLOC_022741 NA non-coding upstream 1866582 3958172 ~ 3959423 (+)
XLOC_022761 NA non-coding downstream 244336 6082660 ~ 6089253 (+)
XLOC_022764 NA non-coding downstream 551111 6389435 ~ 6399785 (+)
XLOC_022765 BX120013.1 non-coding downstream 566870 6405194 ~ 6405316 (+)
XLOC_022766 CR790361.1 non-coding downstream 743728 6582052 ~ 6582168 (+)

Expression


Co-expression Network