XLOC_022747


Basic Information

Item Value
gene id XLOC_022747
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 4504746 ~ 4508590 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046916
AGAGCGCTTTCAGTGCACCTCACTGTAAAAGCATGTGAAAGAGAAAAGCAGGGCAGAGGAAAGAGAAGAAAGGCTAAAAAAAAGAAAGGGGGGAAGAAAACAACTTGAGCGGGACAGGCTTGTTAAATTTAGATATGTTTATATGGACctttgcttgtgtgtttgtttttcgcGAGAAAGTGTTCGCGGACCAAACTAAGAAGAGTTGAACGGAGTTGAGGCTTGAAGGAGAATGCTACCCAACACTCATCTTTAAAAATAGTGTAGTCAAGCGTGGTTTGGGACACCCGAGAACTGCCGTCGGCATAAATCCTACCTGACCTGAACGGTGAGAGACTTTAGCGCGTGTTTATGTATTTACGGGAAGGATTATTGCTTTAGCAGCTCTGTTCTGCGAAGTGGATCAACTCACCTCATCGTGGGACGTGCAAACCCTTCCAGAATGTGTTCATGTGGCTTGATATGACTTAATCATTCTGCATAGCAGACGCCTTTTAGTTTAGTGGCCTGGTTTCTTCACAAAATGAACGTTGTGTTATTAGCCATCTTTTCTTTCCACTTCCAAAAGTCTCTCTTTCTTGAAGGAACACACTGTTTTTGCAAGTACACAAATTTTACAATTCACCTTGAGTTACATACAATTTTTTGAATCCATTGAATGCATTCAGATTAGACTATTAGGTTTATTTTCTAAACTAGCCGGCCTAAACCCTTAGACTGattggtaccgggccgcacaaaaagtcattaattattttcgttttatttattatataagtttgaacaatcttttattttgaaaaatgaccatattcttgcttacatcttggtcacttaaGTGCCAAAATTTAACATACAAGCatcaaaatgagtaagaaacagacatctatGGAAAGTTTCATTGCTAGGAGAAAGGCTCAGTGAAGAAACCACAAACTGCCAAGAAATAGATCCGTAATCCATTTGCCAACAAATTAGGTGAATCCAGCATAtgtgtgcaagaagatcaactgctggaaatcgcaaatgacggcggcctttCAAGGACCGTTCGCATATCGCATCTTTTCTAGActtcgtgcaagttcattattttgtGACACACTCAAGCCTTTCAGATGCACACAGCCGCCAGCGCATagtgagtcacgtgacaagaactgacctatcagcttcatactttgtatggtaTATTCAGTAGagtaattatctcagacaaatacAGAACACCCCAACACTGCactgctttgtaattttctccataaataaaacttgtatcagagtgtgagcaatgttttgtcagcttgtcaacctctgagaaaacggttgatggtggCCTAGCaatctatactatactataatatatacagatgCGCTGCAACCTCTGTTTATACAGTCTATTGGCACGACTCGCGTGAGCTATGCTCTCTTTATTGCAACCATTGTATACCCgttgttttgagctgctgtgatgCGAACGGAGCGATCGCCCTCATCTAGTGTCTCATCCAACCTTGTGACCTTTCCCAGAAGCTCCACGAGTCTCCCACATATTCATACCGTGACGCAAACTAGTTAAAACACCGGAAATCATGGCGATGACAGTGAATGAGCATTACAGTTATTAGGTTAAATGAATAGAACAGTAAAGATATTTCGAGTGCAAATCTCTCTTTCTTGAAGAGCTGCTGAGAGACTCTCCAGATCGACAGGCAATAAACGGAGAAATATTTGAATGGCCTTACacgtatttaggcctttttacatgagaactgaaagttctgtgtttttgacaataatGCAAGTTCATTAAAACCTGGCTAgaaatattagataaataaaaaaactttaaaaatatatatattttaacataaatatttaacaatataacattttgaaatttacttattacaataaacagtagtttataggcctatttcctTAGTAAAGAATTAATGGATTTATaggcattttaacttcttatgcagggccagacggaatctgcggagaattttggtaaacaaataaagtctctcatataatatatctactgaatgacagaaaatattactttacaaactgcattgtacataaatcagatgaacgttttcatattagtcagtaatatttctgtaaataattaaaaaaactaaataaatttagatttacagacatttactcaagtaaataaacagaatttatgaTGGGCTAAAAAAAATCGACAGAATTCTGTGGGtaatctgcggaattctgagcgtgcagattccgtgtgggcctacttacaTGCATCAAATATGTGCTACAAACtaagacatgttgaattcttcttccatcacttgcaatgtttccaaatggCTTTGTTAGTAATATTTCTCAAcaattttacttatatttatctGTTGAATCTATTACTTActttaaagctgcttctggccaggACATGTTCACACTAAAATATTTATAAGAGACATGTTCAggggattatatgcagcatccttaatttattctcttaggtaaacAAAAGTATCATactgtgctttatgcattataaagcttaaagcattaGAATCGGTACTCGATATCGGCCGATCACTATGACGAGGAATCGGTTCTCAGTATCAGATGCTAAAATCCTGATTGGAGGCATCCCTAGTTTCTGCCCAGCTCACAATtaggtttttaaattatattattatttatattatgaatgtttagatctttttttttttgtaattgctgtTTGAGGTAGAActgtattgaaataatttaaaatgtctttCTCTGAGTTGCATGGATCAAGCCACAGCACATGTTTGAGTAAACAAtaagagaattttcattttatgttAAAGGTGTTCTATCAACAGAACAGTTTTTTGTTCACTTTATTAATgccatatttttatttcatttctctctccatctctctccgCCTGCTGTATTCAGCGAGTCTACCCATACAGCAGTGCTCTCGTAAAGATTATTTTCCTTGGAGTGGAGGCGAATGAAAGTAGGACAGGTTTTCATCAGGATAGCTTGCGATGTGTCAAACGTATTACGACTCATCATGCAAATATGGAACTTTCTGGTAATTAAAAGTCACTCTTGGAGCGGCTCATGAAGGAATAGGTGTAGGTGTGCGAGCTTTCATCTGTACATCTGTATGTTTGGGTGTACGTGTCTCGGATAGATCGATGGCTTGGGGGTTGGTGATGAAAACAGCCTGCTTGGTCTGTTTGGgttttttttccatctcctgCCAGCTGCATTATGCTGCGGATGGAGCCATGGCTTGACCAAAATAAACCTGCCAAATCCTGCAAGGAGCCAGAGATGGAaggaaaaatacatgttttttttttccttctttttcacTTGAGATGGCCCATGTCCAGACAGGCTTATAATCACACTGTTCATTATTTTATTGACAGATGCAACATGCCGGGTTGGAGAGAATACAGATTGGTGTGCAAACCTCTGGGACGAATGGAGTCATGGACCTGCATGAAATATTGTGTGGATGGCATTATTATACTTGGACCAGGCACTGAGCTCTCGAAAAAACTGACTTGGAAAATATACATGCCACAATATAGACGCATTCGCTGCACTTGTGTTTAGTTAAACTGTCAGTACGCTGACATTAAACAAGTCCTTTTAATCTCAGGGTTTCTCTCTCCGAGTTCTCAAGCCACCCTGATTCAAGCTAATGAGTTTAACAGAATCTGAATCTGAGGAAACCACACATTGAAAGCAGCAGAACGCACCCAGATATAACATTTTACGACTGAATTATACAAAACCGTGCATATCACTAATAGAAATAAAGAGGAATCAACTTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046916 True 3845 lncRNA 0.38 1 4504746 4508590

Neighbor

gene id symbol gene type direction distance location
XLOC_022746 BX004842.2 coding upstream 66998 4434117 ~ 4437748 (+)
XLOC_022745 ccny coding upstream 80514 4373033 ~ 4424232 (+)
XLOC_022744 CU462914.1 coding upstream 348347 4154959 ~ 4156399 (+)
XLOC_022743 CT583636.1 coding upstream 445173 4059456 ~ 4059573 (+)
XLOC_022742 pfkpa coding upstream 500209 3963684 ~ 4004537 (+)
XLOC_022748 NA coding downstream 452383 4960973 ~ 4967249 (+)
XLOC_022749 zic4 coding downstream 469272 4977862 ~ 4983423 (+)
XLOC_022750 si:ch73-206p6.1 coding downstream 699581 5208171 ~ 5214940 (+)
XLOC_022751 plod2 coding downstream 729119 5237709 ~ 5314707 (+)
XLOC_022752 si:ch211-157j23.3 coding downstream 1280992 5789582 ~ 5798424 (+)
XLOC_022741 NA non-coding upstream 545323 3958172 ~ 3959423 (+)
XLOC_022740 NA non-coding upstream 692949 3775906 ~ 3811797 (+)
XLOC_022739 NA non-coding upstream 966710 3534182 ~ 3538036 (+)
XLOC_022760 CR385039.1 non-coding downstream 1555081 6063671 ~ 6063785 (+)
XLOC_022761 NA non-coding downstream 1574070 6082660 ~ 6089253 (+)
XLOC_022764 NA non-coding downstream 1880845 6389435 ~ 6399785 (+)
XLOC_022765 BX120013.1 non-coding downstream 1896604 6405194 ~ 6405316 (+)

Expression


Co-expression Network