XLOC_022740


Basic Information

Item Value
gene id XLOC_022740
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 3775906 ~ 3811797 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046913
TTTTTGTCTATGTCAGCGTGGTTGTAAGATTGTTTAGATTTAATAAAGAAAACGACTCATCTTCAGAAGATCCCCATATTTGTTGGGAAATgtaataatattgaaaatgtttgtttgtttttacagctCAGCTGGCTCGGATCAGACAGACAGAGTCAATGAGAAGCTCAAGGAGTTATACCCTGATGTTCTTTTGGAAATAGTAATCCTTCAGACCACTTCCTCTGAGCACGACTACATCTGAAGCTGCTCGACAAGTTTGGAGAGAAACGTAAGCGCAAGATGTTAAGCCACTTCACCAATATCCTGCCTGACACTCCACAGGACTTAGGCAgggaaatatctttttttttcctggattTACTAAGAGcggagacagaaaaaaaaaatcccgcaAGGTAGCTGCAGATTGCATTCATGGGTGGATTCAAAATCAAAATTACAGTCACTGTATTCGTTTGTCTTATTTTCCCAATGTCTTTTTTTCATTCTGACTACACTGATTGTGCCATATGTTGTCCCGGTGAGTAAATCCTCAGGAATACATGTGCAGTATTTAGTGCTGTATTGTAGTAATTCTGTCGTTTATTAAGTTGCCAGAATTCACACATGCCTTTAGCTGGCATATGCTGCTTGTGACATCAGAAAAAggtcattgtgttttgtttttttcactgaTTTGATGTTGGCAACAGATGGCCTGCATTATTGTTTCATTTGTACGATTTGAGAAAGTATAAAACGTTTTCTCATTTTCTGCTTGGGTGATGTTCTGGGATAAAACACATTCACTCAGGCATACCTTATGTTTTTAGTATGtcaaaaatgctgatttaatGCTAAAAGCGAGGCTTTTAAATaacgtttatttaaataaactgtgcaaga
>TCONS_00046914
GCTCGGATCAGACAGACAGAGTCAATGAGAAGCTCAAGGAGTTATACCCTGATGTTCTTTTGGAAATAGGCGTTACTGAAGCACAGATCCAGCATGACAGTAGGGCACAGAGAACTGTAAAAGCAGGACCTGAGGGAAAAGCCTCGGCTGTGCCACCACCAATCACACAGACCTGTACTGGCGAAGAATCCAGCAGCTGATCAGCGCCTGCACCTTCACACCCTGTACAACTTCACTCTTTCCCCCAAGCACCTGCACTCTTCGTGGCCAGAAGACATCCACTGCACCTAGACTGTACCACTCAATACGCTGTAAATAAATCACCCTCCGGGAAAAAGTGTGTTCAGTGTAC
>TCONS_00046915
GCGCAACACTGGTCGCACGCGAGCTTGCAAAGGTAAAAAATACTCCAGTAGCAGCATGTAAATGAGGTCAAATCCTATAGTTGAGGTTACGGCAAGGACAGGCATCATCAGCACCGGCAGCACAAAACGGGAAATAAACGCGCGTTTCCTCGTGAATGAGCGCGCATCTCCCTCTGTCATCTGTGTATGCAAACTTGACAGAACAGGAATGCAGATGATGCGACCTCCGCGTGTCAAACACAAACACGCATGCACGACATTCAGACTGAGCTGGAAATGCATGACTGCGCAGTTACGCGGAGATGATCGGCACTTAATGCTGCATATTCCAGTCTGCGCGTCGCGTCGCCAAGGCGTTAACAAATAAAAGGGATGATGACTGAAATAAACTTTACCTTTACGCTTGGACCTTCTCCTCCTCCTGCGCTTGAACTTGCATTTGACTTGGCTGCTGGGCACCGATGCCATGACGCTCAGATCTTGGAGAACTTGTTCTGCGTGCTGTTTCTGAAGTTGCTCTGCAGTTGCGCACGCGAAACGCTCCGGGAATTCTTCAGCTGCGCTTTTATTCCGCCTCACACTCTTCTGATAAGCTGTGGATGAAGGGTCTGAAAGTGCCGCTCGTCCGGCTGGATGTGTTTGGAGCTCCTCGCGTCCTCCTCGCGCGCGTCTGGAGCTCCTGCGCCTCTCTGCGCTTTTTTTTGGCACCAGCCACTTTGAATCCAATCATGCAGGACGCGTGTCTATTTGCTGCCGCAGATTCTAATTAGAGCCAATCATGACGGTGCTCGCGCTGTGACATCACGAGGGAAAACACGCCCACATCCCGTCATATAGAGCGCGCGGACTCGCTGAATGACTGATGCGCACCGGAGAAACACTGACAGGCTGAGAATCCAGCAGCTGATCAGCGCCTGCACCTTCACACCCTGTACAACTTCACTCTTTCCCCCAAGCACCTGCACTCTTCGTGGCCAGAAGACATCCACTGCACCTAGACTGTACCACTCAATACGCTGTAAATAAATCACCCTCCGGGAAAAAGTGTGTTCAGTGTAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046913 False 888 lncRNA 0.37 2 3775906 3800485
TCONS_00046914 False 352 lncRNA 0.50 3 3776040 3811797
TCONS_00046915 True 1059 lncRNA 0.52 2 3782552 3811797

Neighbor

gene id symbol gene type direction distance location
XLOC_022739 NA coding upstream 237870 3534182 ~ 3538036 (+)
XLOC_022738 wdr37 coding upstream 247928 3478871 ~ 3527978 (+)
XLOC_022737 NA coding upstream 308584 3466480 ~ 3467322 (+)
XLOC_022736 NA coding upstream 427281 3346366 ~ 3348625 (+)
XLOC_022735 bdh1 coding upstream 439506 3328354 ~ 3336400 (+)
XLOC_022741 NA coding downstream 146375 3958172 ~ 3959423 (+)
XLOC_022742 pfkpa coding downstream 151887 3963684 ~ 4004537 (+)
XLOC_022743 CT583636.1 coding downstream 247659 4059456 ~ 4059573 (+)
XLOC_022744 CU462914.1 coding downstream 343162 4154959 ~ 4156399 (+)
XLOC_022745 ccny coding downstream 561236 4373033 ~ 4424232 (+)
XLOC_022732 NA non-coding upstream 803867 2933457 ~ 2972039 (+)
XLOC_022729 NA non-coding upstream 1217679 2555605 ~ 2558227 (+)
XLOC_022747 NA non-coding downstream 692949 4504746 ~ 4508590 (+)
XLOC_022748 NA non-coding downstream 1149176 4960973 ~ 4967249 (+)

Expression


Co-expression Network