XLOC_022745 (ccny)


Basic Information

Item Value
gene id XLOC_022745
gene name ccny
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 4373033 ~ 4424232 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045240
GGCTGAACCGGAAGCTGTTCCGGTGTTCTCTCTCTTtcagtgtgtatatgtgtatgattGTAGGCTCGGCGCTACACTGACAGCTGAACGATACGATGTAACAGCGACGCGAGGGAATGGAAAAACCTACCGACACATAAACATCGCGTGGATTATGCGTTGAGGACAGTCGTGACCCGCTGATGTCTTTCCACGAGCGGGAGTGATCGCAGAGCCCGTGTTTCATCCCGTCATCCGCAGCTGTTACGCCCATCAACTGCGGAGGGGCTCCGTCGATCGGAGCCGTTTGTTGATCTGCTCGTACCGGGTACCGGGTGTACTCATGGGGAACAGCACATCATGCTGCGTGTCGTCCAGCCCGAAGCTCCGGAGGAACGCGCACTCGAGGCTGGAGCCGTACCGGCCCGAACCGGAGCTGAGCCGCGAGGACACGGGCTGCAACCTGCAGCACATCAGCGACAGAGAAAACATAGACGAGCTCAACATGGAGTACAATCCTTCAGATCATCCTCGCGCCAGCACCATCTTCCTCAGCAAGTCTCAGACTGACGTTCGGGAAAAACGGAAAAGCCTGTATGTCAACCATTTAACGCACATTGCGGAGTCAAAGCAACATCCGTCTGGTCCAATGAGACGGAAGTACAGCTCATGTTCGACGATCTTCCTAGACGACAGCACCGTCAGCCAACCCAACCTCAAATACACCATCAAATGTGTCGCCCTCGCAATATACTACCACATAAAGAACAGAAATGTGGACGGGCGAATGCTGTTAGACATTTTTGATGAAAAGCTTCATCCACTTTCaAAATCGGAGGTGCCGTCAGACTACGACAAGCACGACCCGGAGCAGAAACAGATCTACAGATTTGTCCGAACGCTTTTCAGTGCCGCTCAGCTCACGGCCGAGTGCGCCATAGTTACTCTGgtgTACCTGGAAAGATTATTAACGTATGCAGAGATTGATATTTGTC
>TCONS_00045242
ATGGGGAACAGCACATCATGCTGCGTGTCGTCCAGCCCGAAGCTCCGGAGGAACGCGCACTCGAGGCTGGAGCCGTACCGGCCCGAACCGGAGCTGAGCCGCGAGGACACGGGCTGCAACCTGCAGCACATCAGCGACAGAGAAAACATAGACGAGCTCAACATGGAGTACAATCCTTCAGATCATCCTCGCGCCAGCACCATCTTCCTCAGCAAGTCTCAGACTGACGTTCGGGAAAAACGGAAAAGCCTGTATGTCAACCATCAACATCCGTCTGGTCCAATGAGACGGAAGTACAGCTCATGTTCGACGATCTTCCTAGACGACAGCACCGTCAGCCAACCCAACCTCAAATACACCATCAAATGTGTCGCCCTCGCAATATACTACCACATAAAGAACAGAAATGTGGACGGGCGAATGCTGTTAGACATTTTTGATGAAAAGCTTCATCCACTTTCaAAATCGGAGGTGCCGTCAGACTACGACAAGCACGACCCGGAGCAGAAACAGATCTACAGATTTGTCCGAACGCTTTTCAGTGCCGCTCAGCTCACGGCCGAGTGCGCCATAGTTACTCTGgtgTACCTGGAAAGATTATTAACGTATGCAGAGATTGATATTTGTCCTGCTAACTGGAAGCGGATCGTTTTGGGTGCCATCCTGTTGGCATCGAAGGTGTGGGATGATCAGGCTGTGTGGAACGTGGACTATTGCCAGATCCTCAAAGACATCACTGTGGAagacatGAACGAGTTGGAGCGGCAGTTTCTGGAGTTGCTGCAGTTCAATATTAACGTCCCATCGAGTGTCTACGCCAAGTACTATTTCGACTTGCGTTCGCTCTCGGAGGCGAACAACCTCAGCTTTCCCCTGGAGCCTCTCAGCAGAGATAAAGCCCAGAAACTGGAGGCAATATCCAGGCTTTGTGACGACAAATATAAAGACTTGAGAAAAGCAGCCAAGAAACGCTCAGTGAGTGCAGATAACCTGTCAGTGGTCAGATGGTCACCGGCCATCATATCCTAA
>TCONS_00045241
ATGGGGAACAGCACATCATGCTGCGTGTCGTCCAGCCCGAAGCTCCGGAGGAACGCGCACTCGAGGCTGGAGCCGTACCGGCCCGAACCGGAGCTGAGCCGCGAGGACACGGGCTGCAACCTGCAGCACATCAGCGACAGAGAAAACATAGACGAGCTCAACATGGAGTACAATCCTTCAGATCATCCTCGCGCCAGCACCATCTTCCTCAGCAAGTCTCAGACTGACGTTCTTTTGCCCAACAAGAAAGTTCGGGAAAAACGGAAAAGCCTGTATGTCAACCATCAACATCCGTCTGGTCCAATGAGACGGAAGTACAGCTCATGTTCGACGATCTTCCTAGACGACAGCACCGTCAGCCAACCCAACCTCAAATACACCATCAAATGTGTCGCCCTCGCAATATACTACCACATAAAGAACAGAAATGTGGACGGGCGAATGCTGTTAGACATTTTTGATGAAAAGCTTCATCCACTTTCaAAATCGGAGGTGCCGTCAGACTACGACAAGCACGACCCGGAGCAGAAACAGATCTACAGATTTGTCCGAACGCTTTTCAGTGCCGCTCAGCTCACGGCCGAGTGCGCCATAGTTACTCTGgtgTACCTGGAAAGATTATTAACGTATGCAGAGATTGATATTTGTCCTGCTAACTGGAAGCGGATCGTTTTGGGTGCCATCCTGTTGGCATCGAAGGTGTGGGATGATCAGGCTGTGTGGAACGTGGACTATTGCCAGATCCTCAAAGACATCACTGTGGAagacatGAACGAGTTGGAGCGGCAGTTTCTGGAGTTGCTGCAGTTCAATATTAACGTCCCATCGAGTGTCTACGCCAAGTACTATTTCGACTTGCGTTCGCTCTCGGAGGCGAACAACCTCAGCTTTCCCCTGGAGCCTCTCAGCAGAGATAAAGCCCAGAAACTGGAGGCAATATCCAGGCTTTGTGACGACAAATATAAAGACTTGAGAAAAGCAGCCAAGAAACGCTCAGTGAGTGCAGATAACCTGTCAGTGGTCAGATGGTCACCGGCCATCATATCCTAA
>TCONS_00045243
ATGGGGAACAGCACATCATGCTGCGTGTCGTCCAGCCCGAAGCTCCGGAGGAACGCGCACTCGAGGCTGGAGCCGTACCGGCCCGAACCGGAGCTGAGCCGCGAGGACACGGGCTGCAACCTGCAGCACATCAGCGACAGAGAAAACATAGACGAGCTCAACATGGAGTACAATCCTTCAGATCATCCTCGCGCCAGCACCATCTTCCTCAGCAAGTCTCAGACTGACGgtgagacacacaaacacacagactcTTTGTAATTTTGTGTGTGTCCTTGTCTTTTAGCAACATCCGTCTGGTCCAATGAGACGGAAGTACAGCTCATGTTCGACGATCTTCCTAGACGACAGCACCGTCAGCCAACCCAACCTCAAATACACCATCAAATGTGTCGCCCTCGCAATATACTACCACATAAAGAACAGAAATGTGGACGGGCGAATGCTGTTAGACATTTTTGATGAAAAGCTTCATCCACTTTCaAAATCGGAGGTGCCGTCAGACTACGACAAGCACGACCCGGAGCAGAAACAGATCTACAGATTTGTCCGAACGCTTTTCAGTGCCGCTCAGCTCACGGCCGAGTGCGCCATAGTTACTCTGgtgTACCTGGAAAGATTATTAACGTATGCAGAGATTGATATTTGTCCTGCTAACTGGAAGCGGATCGTTTTGGGTGCCATCCTGTTGGCATCGAAGGTGTGGGATGATCAGGCTGTGTGGAACGTGGACTATTGCCAGATCCTCAAAGACATCACTGTGGAagacatGAACGAGTTGGAGCGGCAGTTTCTGGAGTTGCTGCAGTTCAATATTAACGTCCCATCGAGTGTCTACGCCAAGTACTATTTCGACTTGCGTTCGCTCTCGGAGGCGAACAACCTCAGCTTTCCCCTGGAGCCTCTCAGCAGAGATAAAGCCCAGAAACTGGAGGCAATATCCAGGCTTTGTGACGACAAATATAAAGACTTGAGAAAAGCAGCCAAGAAACGCTCAGTGAGTGCAGATAACCTGTCAGTGGTCAGATGGTCACCGGCCATCATATCCTAATAACAGTGGACATTGAAGACTTTGacgagacacacacatacacactcgtgCTCAGCACCTCCACAAGACTCTTGAGCCAGAGGTTTCTGTGTCCCTGCTGGTCAGATGGCTGCTGTaaatacaacacaaacacacacacacacacacacacacacacacacacacacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagatcacTTTCCAACCTGTGGCTTAGAGGACAGAGGGAGAGGAAAACGAGGGAGAAACCCCCCCAAAAGACGCCTGTGACTGGAAAAGCATTCCTTCAACTGTGTCATTACGTGTTTGCCATTCTAGGTGAGGAAGTTTCGAAAACGTGTTTCTTGATCTTGTAAGGTTAAAAAGGATGCATCAAGATGGCCAAAAAAACAAACCACAACCATGTCTTTATGAGATAAACATTCCTTTAAAGTATTTCCCTCCAAAATGGCTGTGAGCTAATGGAATTATCACCATTGTAGTCATTCA

Function

symbol description
ccny Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Acts upstream of or within response to yeast. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human CCNY (cyclin Y).

GO:

id name namespace
GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0001878 response to yeast biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function
GO:0019901 protein kinase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091117-45 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Acts upstream of or within response to yeast. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human CCNY (cyclin Y).

Ensembl:

ensembl_id ENSDARG00000063677

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045240 False 974 mRNA 0.53 9 4373033 4417743
TCONS_00045242 False 1029 mRNA 0.51 10 4373355 4423703
TCONS_00045241 False 1050 mRNA 0.51 11 4373355 4423703
TCONS_00045243 True 1580 mRNA 0.48 9 4373355 4424232

Neighbor

gene id symbol gene type direction distance location
XLOC_022744 CU462914.1 coding upstream 216634 4154959 ~ 4156399 (+)
XLOC_022743 CT583636.1 coding upstream 313460 4059456 ~ 4059573 (+)
XLOC_022742 pfkpa coding upstream 368496 3963684 ~ 4004537 (+)
XLOC_022741 NA coding upstream 413610 3958172 ~ 3959423 (+)
XLOC_022740 NA coding upstream 561236 3775906 ~ 3811797 (+)
XLOC_022746 BX004842.2 coding downstream 9885 4434117 ~ 4437748 (+)
XLOC_022747 NA coding downstream 80514 4504746 ~ 4508590 (+)
XLOC_022748 NA coding downstream 536741 4960973 ~ 4967249 (+)
XLOC_022749 zic4 coding downstream 553630 4977862 ~ 4983423 (+)
XLOC_022750 si:ch73-206p6.1 coding downstream 783939 5208171 ~ 5214940 (+)
XLOC_022739 NA non-coding upstream 834997 3534182 ~ 3538036 (+)
XLOC_022760 CR385039.1 non-coding downstream 1639439 6063671 ~ 6063785 (+)
XLOC_022761 NA non-coding downstream 1658428 6082660 ~ 6089253 (+)
XLOC_022764 NA non-coding downstream 1965203 6389435 ~ 6399785 (+)

Expression


Co-expression Network