RNA id: TCONS_00045243


Basic Information

Item Value
RNA id TCONS_00045243
length 1580
RNA type mRNA
GC content 0.48
exon number 9
gene id XLOC_022745
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 4373033 ~ 4424232 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGGAACAGCACATCATGCTGCGTGTCGTCCAGCCCGAAGCTCCGGAGGAACGCGCACTCGAGGCTGGAGCCGTACCGGCCCGAACCGGAGCTGAGCCGCGAGGACACGGGCTGCAACCTGCAGCACATCAGCGACAGAGAAAACATAGACGAGCTCAACATGGAGTACAATCCTTCAGATCATCCTCGCGCCAGCACCATCTTCCTCAGCAAGTCTCAGACTGACGgtgagacacacaaacacacagactcTTTGTAATTTTGTGTGTGTCCTTGTCTTTTAGCAACATCCGTCTGGTCCAATGAGACGGAAGTACAGCTCATGTTCGACGATCTTCCTAGACGACAGCACCGTCAGCCAACCCAACCTCAAATACACCATCAAATGTGTCGCCCTCGCAATATACTACCACATAAAGAACAGAAATGTGGACGGGCGAATGCTGTTAGACATTTTTGATGAAAAGCTTCATCCACTTTCaAAATCGGAGGTGCCGTCAGACTACGACAAGCACGACCCGGAGCAGAAACAGATCTACAGATTTGTCCGAACGCTTTTCAGTGCCGCTCAGCTCACGGCCGAGTGCGCCATAGTTACTCTGgtgTACCTGGAAAGATTATTAACGTATGCAGAGATTGATATTTGTCCTGCTAACTGGAAGCGGATCGTTTTGGGTGCCATCCTGTTGGCATCGAAGGTGTGGGATGATCAGGCTGTGTGGAACGTGGACTATTGCCAGATCCTCAAAGACATCACTGTGGAagacatGAACGAGTTGGAGCGGCAGTTTCTGGAGTTGCTGCAGTTCAATATTAACGTCCCATCGAGTGTCTACGCCAAGTACTATTTCGACTTGCGTTCGCTCTCGGAGGCGAACAACCTCAGCTTTCCCCTGGAGCCTCTCAGCAGAGATAAAGCCCAGAAACTGGAGGCAATATCCAGGCTTTGTGACGACAAATATAAAGACTTGAGAAAAGCAGCCAAGAAACGCTCAGTGAGTGCAGATAACCTGTCAGTGGTCAGATGGTCACCGGCCATCATATCCTAATAACAGTGGACATTGAAGACTTTGacgagacacacacatacacactcgtgCTCAGCACCTCCACAAGACTCTTGAGCCAGAGGTTTCTGTGTCCCTGCTGGTCAGATGGCTGCTGTaaatacaacacaaacacacacacacacacacacacacacacacacacacacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagatcacTTTCCAACCTGTGGCTTAGAGGACAGAGGGAGAGGAAAACGAGGGAGAAACCCCCCCAAAAGACGCCTGTGACTGGAAAAGCATTCCTTCAACTGTGTCATTACGTGTTTGCCATTCTAGGTGAGGAAGTTTCGAAAACGTGTTTCTTGATCTTGTAAGGTTAAAAAGGATGCATCAAGATGGCCAAAAAAACAAACCACAACCATGTCTTTATGAGATAAACATTCCTTTAAAGTATTTCCCTCCAAAATGGCTGTGAGCTAATGGAATTATCACCATTGTAGTCATTCA

Function

GO:

id name namespace
GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0001878 response to yeast biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function
GO:0019901 protein kinase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091117-45 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Acts upstream of or within response to yeast. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human CCNY (cyclin Y).

Ensembl:

ensembl_id ENSDART00000138943

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046790 lncRNA upstream 413932 3958172 ~ 3959423 (+) True XLOC_022741
TCONS_00046914 lncRNA upstream 561558 3776040 ~ 3811797 (+) False XLOC_022740
TCONS_00046915 lncRNA upstream 561558 3782552 ~ 3811797 (+) True XLOC_022740
TCONS_00046913 lncRNA upstream 572870 3775906 ~ 3800485 (+) False XLOC_022740
TCONS_00046912 lncRNA upstream 835319 3534182 ~ 3538036 (+) True XLOC_022739
TCONS_00046916 lncRNA downstream 80514 4504746 ~ 4508590 (+) True XLOC_022747
TCONS_00046917 lncRNA downstream 536741 4960973 ~ 4967249 (+) False XLOC_022748
TCONS_00046918 lncRNA downstream 539212 4963444 ~ 4967249 (+) True XLOC_022748
TCONS_00045249 lncRNA downstream 813477 5237709 ~ 5268228 (+) False XLOC_022751
TCONS_00045250 lncRNA downstream 813480 5237712 ~ 5262514 (+) False XLOC_022751
TCONS_00045235 mRNA upstream 368818 3963684 ~ 4004537 (+) False XLOC_022742
TCONS_00045234 mRNA upstream 368818 3963684 ~ 4004537 (+) False XLOC_022742
TCONS_00045233 mRNA upstream 368818 3963684 ~ 4004537 (+) False XLOC_022742
TCONS_00045236 mRNA upstream 369303 3963781 ~ 4004052 (+) False XLOC_022742
TCONS_00045237 mRNA upstream 386440 3972260 ~ 3986915 (+) True XLOC_022742
TCONS_00045244 mRNA downstream 9885 4434117 ~ 4437748 (+) True XLOC_022746
TCONS_00045245 mRNA downstream 553630 4977862 ~ 4982417 (+) False XLOC_022749
TCONS_00045246 mRNA downstream 553823 4978055 ~ 4983423 (+) True XLOC_022749
TCONS_00045247 mRNA downstream 783939 5208171 ~ 5214940 (+) False XLOC_022750
TCONS_00045248 mRNA downstream 784022 5208254 ~ 5213223 (+) True XLOC_022750
TCONS_00045239 other upstream 216956 4154959 ~ 4156399 (+) True XLOC_022744
TCONS_00045238 other upstream 313782 4059456 ~ 4059573 (+) True XLOC_022743
TCONS_00045212 other upstream 2570971 1802268 ~ 1802384 (+) True XLOC_022724
TCONS_00045190 other upstream 4120429 252805 ~ 252926 (+) True XLOC_022698
TCONS_00045189 other upstream 4134992 238247 ~ 238363 (+) True XLOC_022706
TCONS_00045270 other downstream 1639439 6063671 ~ 6063785 (+) True XLOC_022760
TCONS_00045273 other downstream 1980962 6405194 ~ 6405316 (+) True XLOC_022765
TCONS_00045274 other downstream 2157820 6582052 ~ 6582168 (+) True XLOC_022766
TCONS_00045322 other downstream 5322060 9746292 ~ 9866290 (+) True XLOC_022791
TCONS_00045329 other downstream 5813057 10237289 ~ 10270299 (+) True XLOC_022794

Expression Profile

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