AMCG00009049 (trpc1)


Basic Information

Item Value
gene id AMCG00009049
gene name trpc1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22632717 ~ 22648476 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009049
ATCAGGACCAATGCGTTGAGAGCGCCAGGCGGGGGTGAAGTTGTTTATAATAGCTCGCTGGTTATAAAGATACAGCTTGCGTCCCGTATAAAGGCATATGTCGTATATGTACACGAAAATAGAATAAATAGCAGGAGAAAGAACTTGGGAGTGACTATAAAAATCTCCCTGCATCATAAAACAGATCACACATCGCCGAGCAACCGCAAGGAAAGAAGATTGGACATAATTATCTTGGAATTGTATTGCTCAGCTGTTGATACTGAGGTGGGGGTGTTGCTCCTCtagaacgaaaaaaaaaaacgaaacggAAGGGCTTCTTCTTTAAATGGACGCTTCTGCTTAGTGTGTGATGCACATCAATGTGTTGCCGTACTCTTTTTCTGTCATAATGGCTGCTCTGTACCAGAGCACAGATTCGTCCTCTCCGGATAAGTATCTGGCACTGAAGGATGTGCGGGAGGTGAAAGAGGAAACGACCCTGGACGAGAAGCTATTCTTGCTGGCTTGTGAGAAAGgtGACTATTATATGGTGAAAAAACTTTTGGAAGAGAAGAGGCATGGTGACTTTAATATTAACTGTGTGGATGTTCTGGGCAGAAATGCTGTCAccatttcaattgaaaatgaGAACTTGGATATTCTGCAACTTCTTTTGGAGCATGGATGTCAGaCCACAGATGCACTTCTGGTTGCCATTGATTCAGAAGTAGTGGGGGCCGTTGATATCCTACTCAATCATCGACCAAGGAGGTCCTCCAAGCCATCAATTGCAAAACTGATGCAGCGTATTCAGAACCCGGAGTACTCTACAACTATGGATGTGGCCCCTGTCATTCTTGCGGCTCATCGGAACAACTATGAGATCCTGACCATGCTGCTGAAGCAGGACATCTCCCTGCCCAGGCCTCATGCGGTTGGCTGCGAGTGCACCCTCTGCAATGCCAAGAACAAAAAGGACAATATATACCGCTGCTTGGCAAGCCCCTCGCTGATAATGCTCACTGAAGAAGACCCAATACTCAGAGCCTTTGAGCTCAGTACAGACCTGAAGGAGCTTAGCCTGGTGGAAGTGGAGTTCAGAAATGACTATGAGGAGCTGGCCAAACAGTGCAAGATGTTTGCCAAGGACCTGCTGGCTCAGGCCAGGAACTCCCGGGAGCTGGAGGTGATTCTGAACCACACGTACAGCGACGAGCATGTGGACAAGCGGGGCCTGCTGGAGGAGCGCATGAACCTCAGCCGCCTCAAACTGGCCATCAAGTACAACCAGAAGGAGTTTGTGGCCCAGTCAAACTGCCAGCAGTTCCTAAACACAGTGTGGTTTGGGCAGACAGCCAGCTATAGGCGTAAGCACACTTGTCTGAAGATCCTGACAGTATTGACAGTGGCTATGCTTTGGCCtatcctgtctgtctgttacCTGCTGGTGCCAAGATCCCGAGTAGGCCAGGTTATCCACACTCCCTTTGTGAAGTTCATCATCCACATGGCTTCCTACTTCACCTTCCTGTTGCTGCTCAACCTCTACTCACTGGTCTACAATGAAGGCAAGAGAAACACCATGGGCCCAGCCCTAGAAATGATTGACTACTTGCTGATTCTTTGGATCATAGgAATGGTGTGGTCAGATGTGAAAAGACTGTGGTATGAAGGGCTGGAGGATTTTTTGGAGGAATCACGTAATCAGCTGAGTTTCGTCATGAACTCCCTCTATTTGTCAACCTTTGCCCTGAAAGTGGTAGCACACCACAAGtttaaaaacaaagatgacaCAGAGAGGAAGTATTGGGATGCTTTTCATCCCATCCTGGTCGCTGAGGGTCTTTTTGCCTTTGCCAATATTTCAATGGGACAGATGCTTCAGGAATTCGGCAAGTTCCTGGGTCTGTTTCTGCTTGTTCTCTTCTCCTTCACCATTGGGCTGACACAGCTGTACGGCAAGGATGAGAAGGAACGAAGCAAGACTGCGGAGAAAGACTGTGTGGGGATTTTCTGCGAGCAACAAAGCAATGATACATTCCATTCGTTCATAGGCACATGTTATGCCTTGTTCTGGTACATTTTTTCCATGGCCCATGTGGCTCTGTACGTGACAAGGATCAGCTATTCAGAGGAGTTGCGCTCATTTGTCGGAGCCTTGATCATTGGAACATATAACATTGTGGTTGTCATTGTTTTGACGAAACTGCTGGTAGCTATGCTGCACAAAAGTTTCCGCCAGATCGCAaACCACGAGGACAAAGAATGGAAGTTCGCCAGGGCCAAGCTGTGGCTGAGCTATTTTGATGACAAATGTACCTTGCCTCCCCCCTTCAATATCATACCTTCCCCAAAGACCATATGCTATCTCATCACCAGCCTCAGTAAATGGATCTGCTCTCACACCTCCAAAGGCAAGgtcaaaagacaaaacagcCTCAAAGAGTGGAAGACCCTGAAGCAGAAACGAGATGAGAATTACCAGAAGATAATGTGCTGTCTTGTTCATCGATACCTGACCTCTACCAGACAGAAGTTGCAGAGCACTGACCAGGCCACAGTGGAGAACCTCAATGATCTCAGACAGGACCTTTCCAAATTCCGAAACGAAATGAGGGATCTGCTTGGTTTCCGAACCTCCAAGTATGCCATGTTTTACCCCAGAAGCTAACTCTTTCCCCTGCAAGCCAAGAATGCTTGAAAATCTCCATCTTCTAGTTCAGGAAAATagaggacattttaaaattcccTGGAACTTACTGGAACACCTTTCATATAGAACCCCTTGAAAATCTGCCCTTGTATATTATACTCaactgttatttgttttttaataactgttattctttttaatgaaaagataaaataaatgatttcagaaaaaaaggtATGGATTGATCCTATTCTCCTACACACCAACACAACAAAAATCTC

Function

symbol description
trpc1 Predicted to enable inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity. Acts upstream of or within angiogenesis; filopodium assembly; and vasculogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of cation channel complex. Predicted to be integral component of plasma membrane. Is expressed in bulbus arteriosus; head; integument; and nervous system. Orthologous to human TRPC1 (transient receptor potential cation channel subfamily C member 1).

NR:

description
PREDICTED: short transient receptor potential channel 1

GO:

id name namespace
GO:0046847 filopodium assembly biological_process
GO:0001525 angiogenesis biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0001570 vasculogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005262 calcium channel activity molecular_function

KEGG:

id description
K04964 TRPC1; transient receptor potential cation channel subfamily C member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009049 True 2916 mRNA 0.46 13 22632717 22648476

Neighbor

gene id symbol gene type direction distance location
AMCG00009043 NA coding upstream 1365 22613352 ~ 22631352 (+)
AMCG00009042 NA coding upstream 191250 22430340 ~ 22441467 (+)
AMCG00009038 NA coding upstream 1545692 20997898 ~ 21087025 (+)
AMCG00009035 nlgn1,LOC106584306 coding upstream 1940330 20686145 ~ 20692387 (+)
AMCG00009034 nlgn1 coding upstream 2171703 20456457 ~ 20461014 (+)
AMCG00009050 u2surp coding downstream 21408 22669884 ~ 22686612 (+)
AMCG00009052 chst2 coding downstream 55710 22704186 ~ 22705397 (+)
AMCG00009053 LOC104937275,LOC102787465 coding downstream 202515 22850991 ~ 22854494 (+)
AMCG00009056 zic1 coding downstream 1009725 23658201 ~ 23662213 (+)
AMCG00009058 NA coding downstream 1168349 23816825 ~ 23825087 (+)
G54032 NA non-coding upstream 29240 22534593 ~ 22603477 (+)
G54031 NA non-coding upstream 89955 22521056 ~ 22542762 (+)
G54030 NA non-coding upstream 104634 22519866 ~ 22528083 (+)
G54000 NA non-coding upstream 484291 22147871 ~ 22148426 (+)
G53995 NA non-coding upstream 527314 22105190 ~ 22105403 (+)
G54063 NA non-coding downstream 41462 22689938 ~ 22691180 (+)
G54101 NA non-coding downstream 58665 22707141 ~ 22707844 (+)
G54112 NA non-coding downstream 129899 22778375 ~ 22857522 (+)
G54116 NA non-coding downstream 157763 22806239 ~ 22810596 (+)
G54138 NA non-coding downstream 327985 22976461 ~ 22976682 (+)
G53917 NA other upstream 1338816 21292241 ~ 21293901 (+)
G53915 NA other upstream 1357363 21274611 ~ 21275354 (+)
G53911 NA other upstream 1464142 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 2236361 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 3085210 19527897 ~ 19547507 (+)
G54263 NA other downstream 1234841 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 2164142 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 2249640 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 2841235 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 2936406 25584882 ~ 25587615 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022756 trpc1 coding NC_007135.7 CM002908.2 5840258 ~ 5869622 (+)
grasscarp (Ctenopharyngodon idella) G276274 NA non-coding CI01000070 null 656663 ~ 676986 (+)