AMCG00009056 (zic1)


Basic Information

Item Value
gene id AMCG00009056
gene name zic1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23658201 ~ 23662213 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009056
GGAATGATTGCGGCTATCAGTCTCGAGCTCACCGCCTGGCTGAGGAGGTGAAAGTTTCTCCACAGGAAGATAAACCGCAAAAGACAATATTGTACATGATTTGCGTTTGCAGTTAAggcgagggagagggggaaaaatcTTTTCcaccaaaaaattaaatagaatCCTGAAAGGAGGAGTTTGCCAAGCTCACATAGAGTAAGTCGCACAATTCTCCcagcaaagaaaaaagcagtggttagattttttttgcgttttttgtgatttttttttcttacggTCGTTTCAGCTGCAGTTAAGATGCTTTTGGACGCAGGACCACAGTATCCTACCATAGGAGTGACTACGTTCGGCTCCTCCAGACATCACTCAACAGGCGATGTCACCGACAGAGAAGTGGGGTTGGGGATAAATCCGTTTGCTGATGGGATGGGCGCTTTTAAAATCAACCACAGTACCCACGATCTAGCTTCTGGCCAAACGGCTTTTTCGTCCCAAGCGCCTGGTTATGCGGCCGCAGCTCTGGGGCATCATCACCACCCCTCCCATGTAAGCTCCTATTCCACCGCGGCTTTCAATTCTACACGGGACTTTCTCTTTCGAAATCGGGGTTTCGGAGAAGCGGCCAGCGCTCAGCACAGCCTCTTTGCGTCTGCAGCAGGAAGTTTTGCGGGGCCACATGGACACACAGATGCCACAGGACACTTACTTTTCCCCGGACTTCACGAGCAGGCGACCACTCACGGGTCTCCCAATGTTGTAAATAGCCAGATGCGCTTGGGCTTTTCTGGGGACATGTACGGCAGAGCCGAGCAATACAGCCAGGTAACAAGCCCCAGATCAGATCACTATGCGTCGACCCAGTTACACAGTTATGGCcctatgaacatgaacatggcTGCACACCATGGGGCAGGGGCCTTTTTTCGGTATATGAGGCAACCTATAAAACAAGAACTTATCTGCAAATGGATTGAACCGGAGCAGTTGAGTAACCCGAAAAAGTCTTGTAATAAAACTTTTAGCACAATGCATGAGCTCGTCACTCACCTCACAGTGGAGCATGTTGGGGGACCAGAACAGTCGAATCATATCTGTTTCTGGGAAGAGTGTTCCAGGGAAGGGAAACCGTTTAAAGCCAAGTACAAACTGGTAAATCACATCCGAGTGCACACAGGCGAGAAACCGTTTCCATGTCCGTTCCCTGGCTGTGGCAAAGTGTTTGCAAGATCTGAAAACCTTAAGATTCACAAAAGGACGCACACGGGTGAAAAACCATTTAAGTGTGAGTTTGAGGGCTGCGACAGGCGATTTGCGAACAGCAGCGATCGTAAGAAACACATGCATGTCCATACGTCTGACAAACCGTAtctctgcaaaatgtgtgacaAGTCATACACCCATCCAAGTTCCCTCAGAAAACACATGaaggTCCACGAATCCTCTTCACAAGGATCACAACCCTCTCCAGCGGCCAGTTCAGGGTACGAGTCCTCTACTCCTCCAACAATCGTGTCTCCTTCGACAGAAAACCAGAGTAGCAGCTCTATATCTCCGGCATCTTCTACAGTGCATCACACGTCCAGTCACAGCACGCTGTCATCAAATTTTAATGAATGGTacgtttaaaatatttaaaaagactgcAGGATTATGACTGCTTGGAATCAAAGACTTATAAAAAGCCGCCAAGTAAACGTGGACCGAAAAACACGAAGAAACCAAAATCTTTTGTAAACGGCTATGTAGTGAAGGGTGTACAATGCATGGACGAGGTACCAGGCCGAATGCCAAGTTTATAGATTGGAAAGACTACAGTAAAAGAGATCTTAAATTGCATGTATCTTCGGGTCGCGgcctgttttgtaaataaagatttactagtttaaatatgtaatattttattttgtaaatagttatattacagtttaaaggcatttgtgaaaaatgtggtCTCTAGATTTATGGGGAAATGAGATGGTTTAAGAATAATGCGATAAATAGTCTTGATTGAAAAGAATGTTATAGTTCATGTGTACCAAATGtgaattatttctgtattactACAGTCTACACGTCGACCTAACCGACTATTAGTATTAATGTGCTTTTGTATTCAGTGCAAACATTTCGTCCCAAAGTCCAGTCTGAGTAGAAAAgtaaattgttgttgttaaatgtCATGTCGATAAATCGTATAGTGGAAGCCTGAAACTCCGTGTCAATCTGTTTATGTAAGAAGTGATATAAAAGATAAACTATTTGTTCATTGCCGTAGCAATTGCAACAAAatgattatatgtatataactcaATTTTCCATATTTATCCGCATGTAAAGGGGCCGCTATAACATGTTAGAAATATTCGATATTTATGGGAAAATGCGTTCGTATGTAAAATTTAGTTTACAAAATTGTTTGGTTACATTTCGTACAGTATTAAAGacttaaaacaaagcaatggcATTCAGCATTATTTCCCAACAGGTTCGCTTAAACAGTGTATTTTTGGAGATTAACAGTCTTATGGGTTCTGCTAGATCATTACTAGACCATCTATGAAGATATAAATTTGATGACTGATAGAACCCCGCTGCTACTGGTATGGAACGCAATTAGTATTTATATctgaatttacaaaataaattctcTACTGCAACATAAATTACCCGAGTCTTGCtataaccatatatatata

Function

symbol description
zic1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and zinc ion binding activity. Acts upstream of or within brain development and embryonic retina morphogenesis in camera-type eye. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; neural keel; neural plate; neural rod; and presumptive neural plate. Human ortholog(s) of this gene implicated in Dandy-Walker syndrome and craniosynostosis. Orthologous to human ZIC1 (Zic family member 1).

NR:

description
PREDICTED: zinc finger protein ZIC 1

GO:

id name namespace
GO:0021534 cell proliferation in hindbrain biological_process
GO:0021592 fourth ventricle development biological_process
GO:0048853 forebrain morphogenesis biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09224 ZIC1; zinc finger protein ZIC 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009056 True 2699 mRNA 0.42 3 23658201 23662213

Neighbor

gene id symbol gene type direction distance location
AMCG00009053 LOC104937275,LOC102787465 coding upstream 803707 22850991 ~ 22854494 (+)
AMCG00009052 chst2 coding upstream 952804 22704186 ~ 22705397 (+)
AMCG00009050 u2surp coding upstream 971589 22669884 ~ 22686612 (+)
AMCG00009049 trpc1 coding upstream 1009725 22632717 ~ 22648476 (+)
AMCG00009043 NA coding upstream 1026849 22613352 ~ 22631352 (+)
AMCG00009058 NA coding downstream 154612 23816825 ~ 23825087 (+)
AMCG00009059 NA coding downstream 163009 23825222 ~ 23840982 (+)
AMCG00009061 NA coding downstream 210495 23872708 ~ 23885824 (+)
AMCG00009064 stag1a,stag1,LOC107722576,LOC107688487,LOC107709887,LOC107586054,LOC106575446 coding downstream 367179 24029392 ~ 24049944 (+)
AMCG00009066 NA coding downstream 401629 24063842 ~ 24071730 (+)
G54194 NA non-coding upstream 208724 23447154 ~ 23449477 (+)
G54174 NA non-coding upstream 423172 23234623 ~ 23235029 (+)
G54166 NA non-coding upstream 466619 23169441 ~ 23191582 (+)
G54138 NA non-coding upstream 681519 22976461 ~ 22976682 (+)
G54112 NA non-coding upstream 800679 22778375 ~ 22857522 (+)
G54237 NA non-coding downstream 1180 23663393 ~ 23664094 (+)
G54238 NA non-coding downstream 1944 23664157 ~ 23664652 (+)
G54264 NA non-coding downstream 227914 23890127 ~ 23894287 (+)
G54328 NA non-coding downstream 503577 24165790 ~ 24166061 (+)
G54356 NA non-coding downstream 615692 24277905 ~ 24278561 (+)
G53917 NA other upstream 2364300 21292241 ~ 21293901 (+)
G53915 NA other upstream 2382847 21274611 ~ 21275354 (+)
G53911 NA other upstream 2489626 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 3261845 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 4110694 19527897 ~ 19547507 (+)
G54263 NA other downstream 221104 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 1150405 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 1235903 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 1827498 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 1922669 25584882 ~ 25587615 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023256 zic1 coding NC_007135.7 CM002908.2 4970580 ~ 4973765 (-)