AMCG00009043


Basic Information

Item Value
gene id AMCG00009043
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22613352 ~ 22631352 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009043
GCAAGGCGCCTATACTCCTTGCTAACGGCATCAAGTAGCCAAAACCTTCCgaatttcttttaaaaagtgaacTTGCTCAGGATTAGATAACACAGCGAATGCACagcaatcaattaaaaaaaaaagtgcattgtgtTTCAGAGATTTAAAAGGGATTTCATTTTCTAACGAGGAGGCAGTAGCCAGCAGTGGTGTACCTCTACGTTTTCCCCAAAGGCTTGTTCGGCACTGTTGCTTAGATGCCATATTCCAGTGCGTAGCTGAAACCGAAGCAAGAGTCCAATGCTTCTTAAAGACCTTTGTCAAGGACTTAGCTGTTTTGGTTTACTAAGCAGTGAGTGAAGTAGTTCAGCTGccagaaaatggaaaataataccACACAGATTTCTCGGGAGGACCTGGAGGAACTGAGGGAAGCTTTTGATAAGATAGACATTGATAACAGTGGCTATGTCAGCGACTTTGAGTTGCAGGAACTCTTTAGAGAGGCCAGATTTTCCTTACCGGGCTTCAAGGTGCGAGAAATCGTAGAGAAGATGCTGGGGGCGGCCGACCACAACAAAGACGAAAAGATATCTTTTGAAGAGTTTGTATCGCTTTATCAGGAGTTGAAAAGTAAGGAGGTCAGAGAGTCGTTCCGCAAAGCCATTAACAAGAAAGATGGAATTAGGTCCTTTGGAGGGACCTCTGGCATATCCAGTGAAGGAACACAGCATTCGTATTCCGATGAAGAAAAAGTTGCATTTGTGAACTGGATTAACAAGACTTTGGCCGAAGATCCAGATTGCAAACATCTATTGCCTATGGACCCGGAAAATGAGAGCCTTTTCAAATCTGTGAAGGACGGCATACTCCTGTGCAAAATGATAAACTTTTCCCAGCCAGATACGATTGACGATAGGgttataaatacaaagaaactgACAACATTTACCATTTCTGAAAATCTGGTCCTAGCTTTGAATTCGGCCTCAGCCATTGGCTGCACCGTGGTCAATATTGATGCCCAGGACCTGATTATGGGAAAGCCACACTTGGTACTGGGCCTACTGTGGCAGATCATCAAGATCGGCCTGTTTGCTGATATTCAGATCTCCAGAAATGAAGCACTCATTGCTCTGCTGGGGGAAGGAGAGGACCTGGAACAACTACTGTCCATGTCCCCAGAGGAGCTTCTGCTGCGCTGGGTCAACTACCACCTCAATAATGCTGGCTGGCAGCCAATCGGAAACTTCACTGAGGATATCAAGGAGAAGGATGATATTCAAAGGGCAGAGTTCATGCTCCAGCAAGCTGCCAGACTGGACTGCAGACAGTTTGTCACCCCTGCAGATGTTGTAGCCGGGATTCATAAACTCAACATCGCTTTTGTGGCCAACCTATTTAATACCTACCCAGCCCTGAACAAACCAAACCACAACGATATTGATTTGTCTTTGCTGGAAGGAGAAACAAGAGAAGAAAGAACATTCCGGAACTGGATGAATTCCTTGGGGGCGTACCCATATGTCAACCACTTATATCGTGACCTGACTGATGCCCTGGTGATCCTTCAGCTGTATGAAAAAATCCAGGTTCCAGTGGAGCAGAAGCGAcTTGAAAACTGTAACTATGCAGTTGAACTTGGAAAGAAGGAAGCTAAATTCTCCTTGGTTGGGATCGGGGGAGTAAACATTAATGAAggcaataaaacacatacattggCCTTGGTGTGGCAGCTAATGAGaagGTACACTGTGAAGGTTCTCTCTGATCTTGGGGAGGGTGAAAAAGTTAACGatgaattaattgttaattgggTGAACACAGCTTTAAAAGAAGGCAAAAAGGAAACTGCCATCACAAGCTTTAAGGACAAGCTTATCAGCACCAGCTTACCGGTGATAGATTTAATAGACACTATTGCCCCCAATGCCATTAAAGAAGAAATGGTGAAGAGGGAGAACCTCTCGGATGAGGACAAGCTGAACAATGCAAAgTATGCAATTTCCGTTTCCCGTAAAATCGGGGCTCAAGTGTATGCTCTGCCTGACGACTTAGTCGAAGTGAAACCAAAAATGGTGATGACAGTGTTTGCGTGTCTGATGGGAAGAGGCCTGAAGAATGTTAAAGCATgaatgaaatgtgctgttttattACTGCCACACAGAGCATATACTAGAATATTGTTTAcagttttgttgattttaccATACATAATAATCCTAGCATCTTATCTTTGCTAGCCATGTTCAAGggagtgtattttattttctgattgttttaaaacttaaatctTGTTTAGCTTATGATTTCAAAGCTCCtgttatttaatcaaattttgAATACTAAGAGACCTTACTCTCCTGCCTTGATTTTTCCACATCTGAGATTCATAACCAAAGTGTTTGTATATCCatgttacattttcagtagCTCATTAAAGATTAATTGTCAGAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009043 True 2439 mRNA 0.43 15 22613352 22631352

Neighbor

gene id symbol gene type direction distance location
AMCG00009042 NA coding upstream 171885 22430340 ~ 22441467 (+)
AMCG00009038 NA coding upstream 1526327 20997898 ~ 21087025 (+)
AMCG00009035 nlgn1,LOC106584306 coding upstream 1920965 20686145 ~ 20692387 (+)
AMCG00009034 nlgn1 coding upstream 2152338 20456457 ~ 20461014 (+)
AMCG00009032 NA coding upstream 2349486 20263075 ~ 20263866 (+)
AMCG00009049 trpc1 coding downstream 1365 22632717 ~ 22648476 (+)
AMCG00009050 u2surp coding downstream 38532 22669884 ~ 22686612 (+)
AMCG00009052 chst2 coding downstream 72834 22704186 ~ 22705397 (+)
AMCG00009053 LOC104937275,LOC102787465 coding downstream 219639 22850991 ~ 22854494 (+)
AMCG00009056 zic1 coding downstream 1026849 23658201 ~ 23662213 (+)
G54032 NA non-coding upstream 9875 22534593 ~ 22603477 (+)
G54031 NA non-coding upstream 70590 22521056 ~ 22542762 (+)
G54030 NA non-coding upstream 85269 22519866 ~ 22528083 (+)
G54000 NA non-coding upstream 464926 22147871 ~ 22148426 (+)
G53995 NA non-coding upstream 507949 22105190 ~ 22105403 (+)
G54063 NA non-coding downstream 58586 22689938 ~ 22691180 (+)
G54101 NA non-coding downstream 75789 22707141 ~ 22707844 (+)
G54112 NA non-coding downstream 147023 22778375 ~ 22857522 (+)
G54116 NA non-coding downstream 174887 22806239 ~ 22810596 (+)
G54138 NA non-coding downstream 345109 22976461 ~ 22976682 (+)
G53917 NA other upstream 1319451 21292241 ~ 21293901 (+)
G53915 NA other upstream 1337998 21274611 ~ 21275354 (+)
G53911 NA other upstream 1444777 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 2216996 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 3065845 19527897 ~ 19547507 (+)
G54263 NA other downstream 1251965 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 2181266 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 2266764 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 2858359 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 2953530 25584882 ~ 25587615 (+)

Expression


Co-expression Network