G54101


Basic Information

Item Value
gene id G54101
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22707141 ~ 22707844 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67632
CTGTTTATAAGCAATTATAGAcaacaatacattcattttaaaatataagatCATTCCAACTGATAAGACAACTTCAAACTTTCACCAGCTATTATTTAACTACCTCAAATTATGTTCTTTTAGTTATAGTTGACCAGGGTTGATAAGCATAATCATTGTGACTAATGTTCTGGATGCATTTCAAATGGCAAAACCGTCTCTCCTGCCTCCTGTCTGCTGCCTTTCAAATGATCTAATCTGCTCCCTAAATGACATGGTCATCTTTGACCTTCTAAATTTAGCAGCATCTGTGAAAGTGATTCACAGTGCTTTTCTAACAAGTGTGTAGCTCACCCCTGCTTTTACAAACATTCTGATTTCCcaaactataaacaaaatacatacaaatcataATTAATAGGAATTAGTGGATTATGCATTCAATGTAGGAAACATAGTGTACATAACaactatgttttattgttgtaaaCATGGTTATTTTTACCTAAATCATTTAGTTACTGTGGTCCTTGAGTATTGCTCTAAGCTTTACAAATATGAGGTATTATGAAGCTATATGTATGCGTATCTGTAAAGTGTTATATTCCATCCCTTTAACCAGTTGCATAATGTGTATGAATTAAGTGGTGAaatatcagtgttattttaaacactttgtaAGTGGTGTTTGCTGAAGTTTAGCTAtctttatctgtttgtttttc

Function

NR:

description
PREDICTED: ubiA prenyltransferase domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67632 True 704 lncRNA 0.32 1 22707141 22707844

Neighbor

gene id symbol gene type direction distance location
AMCG00009052 chst2 coding upstream 1744 22704186 ~ 22705397 (+)
AMCG00009050 u2surp coding upstream 20529 22669884 ~ 22686612 (+)
AMCG00009049 trpc1 coding upstream 58665 22632717 ~ 22648476 (+)
AMCG00009043 NA coding upstream 75789 22613352 ~ 22631352 (+)
AMCG00009042 NA coding upstream 265674 22430340 ~ 22441467 (+)
AMCG00009053 LOC104937275,LOC102787465 coding downstream 143147 22850991 ~ 22854494 (+)
AMCG00009056 zic1 coding downstream 950357 23658201 ~ 23662213 (+)
AMCG00009058 NA coding downstream 1108981 23816825 ~ 23825087 (+)
AMCG00009059 NA coding downstream 1117378 23825222 ~ 23840982 (+)
AMCG00009061 NA coding downstream 1164864 23872708 ~ 23885824 (+)
G54063 NA non-coding upstream 15961 22689938 ~ 22691180 (+)
G54032 NA non-coding upstream 103664 22534593 ~ 22603477 (+)
G54031 NA non-coding upstream 164379 22521056 ~ 22542762 (+)
G54030 NA non-coding upstream 179058 22519866 ~ 22528083 (+)
G54000 NA non-coding upstream 558715 22147871 ~ 22148426 (+)
G54112 NA non-coding downstream 70531 22778375 ~ 22857522 (+)
G54116 NA non-coding downstream 98395 22806239 ~ 22810596 (+)
G54138 NA non-coding downstream 268617 22976461 ~ 22976682 (+)
G54166 NA non-coding downstream 461597 23169441 ~ 23191582 (+)
G54174 NA non-coding downstream 526779 23234623 ~ 23235029 (+)
G53917 NA other upstream 1413240 21292241 ~ 21293901 (+)
G53915 NA other upstream 1431787 21274611 ~ 21275354 (+)
G53911 NA other upstream 1538566 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 2310785 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 3159634 19527897 ~ 19547507 (+)
G54263 NA other downstream 1175473 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 2104774 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 2190272 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 2781867 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 2877038 25584882 ~ 25587615 (+)

Expression


Co-expression Network