G54063


Basic Information

Item Value
gene id G54063
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22689938 ~ 22691180 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67571
CTGGTTTGTCTCCTCAGGAAGCGACGGCACAGTGCATCTCCCAGTCCATCGCGAAATAGCAGCAGGAGAGCAAAGTCGCCATCCCCTCGGTCAGAGCGATCTGAGAGATCCTATGTAAAGGACAGTTCTCGCTCCCGATCCTCTCATAAAGACTCTCCGAGAGACAGCAGTAAAAAGTCTTCAAAGCGGTCACCTTCTGCACCTAGGACACCCAAGAGATCGCGTAGGTCTCGTTCTCGGACACCCAAAAAATCAGGCAAGAAATCCAGGTCGCAGTCCAGATCTCCACACCGATCTCATAAGAAATCGAAGAAAAGCAAGCACTGAcatgtccccctctctcttagTTGTGATGTAAaaaatttcagttttgttacGTGCCTgagaaaattgtaaaaatataaagaaagcattccttttttttcttcccaccCTCTCCCATCCctcccatttttaaaatatatttttatgcacGTCTTGCCATGCTGTGTATTGCCCATCTGTAGAGCCGAcactgttttatattgtaaaataatgaacTTATGTTTAATTTCCTACATGGAATAGACTTAATCATCCTTGTTATTGATTAAATTTGTGTATCTGGTCTCCTGACggtagttttattttcatgactgttttttttttttttgtagatgacattaaaaggatttaaaataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67571 True 682 lncRNA 0.41 2 22689938 22691180

Neighbor

gene id symbol gene type direction distance location
AMCG00009050 u2surp coding upstream 3326 22669884 ~ 22686612 (+)
AMCG00009049 trpc1 coding upstream 41462 22632717 ~ 22648476 (+)
AMCG00009043 NA coding upstream 58586 22613352 ~ 22631352 (+)
AMCG00009042 NA coding upstream 248471 22430340 ~ 22441467 (+)
AMCG00009038 NA coding upstream 1602913 20997898 ~ 21087025 (+)
AMCG00009052 chst2 coding downstream 13006 22704186 ~ 22705397 (+)
AMCG00009053 LOC104937275,LOC102787465 coding downstream 159811 22850991 ~ 22854494 (+)
AMCG00009056 zic1 coding downstream 967021 23658201 ~ 23662213 (+)
AMCG00009058 NA coding downstream 1125645 23816825 ~ 23825087 (+)
AMCG00009059 NA coding downstream 1134042 23825222 ~ 23840982 (+)
G54032 NA non-coding upstream 86461 22534593 ~ 22603477 (+)
G54031 NA non-coding upstream 147176 22521056 ~ 22542762 (+)
G54030 NA non-coding upstream 161855 22519866 ~ 22528083 (+)
G54000 NA non-coding upstream 541512 22147871 ~ 22148426 (+)
G53995 NA non-coding upstream 584535 22105190 ~ 22105403 (+)
G54101 NA non-coding downstream 15961 22707141 ~ 22707844 (+)
G54112 NA non-coding downstream 87195 22778375 ~ 22857522 (+)
G54116 NA non-coding downstream 115059 22806239 ~ 22810596 (+)
G54138 NA non-coding downstream 285281 22976461 ~ 22976682 (+)
G54166 NA non-coding downstream 478261 23169441 ~ 23191582 (+)
G53917 NA other upstream 1396037 21292241 ~ 21293901 (+)
G53915 NA other upstream 1414584 21274611 ~ 21275354 (+)
G53911 NA other upstream 1521363 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 2293582 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 3142431 19527897 ~ 19547507 (+)
G54263 NA other downstream 1192137 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 2121438 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 2206936 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 2798531 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 2893702 25584882 ~ 25587615 (+)

Expression


Co-expression Network