AMCG00009033 (nlgn1,LOC103399994,LOC102210587,LOC102311540)


Basic Information

Item Value
gene id AMCG00009033
gene name nlgn1,LOC103399994,LOC102210587,LOC102311540
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 20376795 ~ 20396356 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009033
ATGTCTCTTCAAAAAGCAGCAAGATTTAACTGTGTGTGGAGAGTGATGAGGGTGCAGCTGCATTCGGGGGTTGATGTGACCTTCGTTCTCTGGATACTTGGGTTCACGCTTCATGCGGTCGTGGTTTCCTCTCAGAAACTGGACGACACTGATCCTGTGGTGACCACCAATTACGGCAAGGTGAGGGGATTTAAAAAGGAACTCAACAACGAAATCCTGGGACCTGTAATCCAGTTTCTCGGGGTGCCTTATGCAGCGCCCCCGACTGGCGAACGAAGATTCCAGCCGCCGGAGCCCCCTTCCCCTTGGTCCGATATCCGCAATGCAACACAGTTTGCCCCCGTTTGCCCCCAGACCATCCTGGAAGGAAGGCTACCAGAAGTCATGCTTCCAGTGTGGTTTACTAATAGCTTGGAGATAGTGTCAACGTATGTGCAAGACCAGAGTGAAGACTGCcttttcataaacatttatGTCCCGACAGAGGATGTAAAAAGAATATCCAAGGAATGTGCCAGGAAACCCGGCAAGAAAATATGTAGAAAAGGAggtatgtataaaataatacgAAAGCTGTGCCACAGAAGAGCTTTTATTATCGACAGCAGAGATGGGTCGCTAATATACTGTGAGTTATGCCAGCAGGTCAATTGA
>TU67307
GGAATGTGCCAGGAAACCCGGCAAGAAAATATGTAGAAAAGGAgattttcagcttcaaccacatccctggggagtttgttccagattgtgataactctctgtgtgaagaagtgtcacctgttttccgtcttgaatgccttgaagcccaatttccaattgtgtccctgggtgcgtgtgtccctgctgatctggaaaagctcctgtgttttgatgtctttcatgattttgaagacttgaatcaagtccccacgtaatctcctctgttccagggtgaaaaggttcagttccctcagtctctccaagtaggacattcccttcaaacctggaataagtctggttgctctcctctgaactgcctctagagcagtgatatctttcttgaagtgtggtgcccagaactgtacacagtatacCAAATGAGgcctaactagcgcattgtataTTCTTAACAtcacttcccttgttctaaattctacacttttgacaatataccctaacattctgtttgccttttttattgcttccccacattgtttggatggagaaagtgaggagtccacatagacgcCTAgctctttctcatgcattacttcatctagttctattccttccacacagcaaaatctatagtgttaaaattacagtgttaaaatatagtgttaaaaatcagtgttgtttcaacactcattgtgttaaattaacacttttagagttaaaccatcttgagagtcagtgttaatattgggtgtcaaaataaagggtgttgattttacactgtactggtgtaaaaccaaataatttaccattcccacaatgcactgtagTAATTTCCAG

Function

symbol description
nlgn1 Predicted to enable neurexin family protein binding activity and signaling receptor activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in excitatory synapse and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and synapse. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; cardiovascular system; eye; gonad; and swim bladder. Orthologous to human NLGN1 (neuroligin 1).

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009033 False 654 mRNA 0.48 3 20376795 20394819
TU67307 True 834 lncRNA 0.40 2 20377790 20396356

Neighbor

gene id symbol gene type direction distance location
AMCG00009032 NA coding upstream 112929 20263075 ~ 20263866 (+)
AMCG00009025 atp11b coding upstream 427360 19939076 ~ 19949435 (+)
AMCG00009026 LOC107550661,LOC107566880 coding upstream 460889 19861278 ~ 19915906 (+)
AMCG00009016 rfc4,LOC103355474 coding upstream 2002527 18361526 ~ 18374268 (+)
AMCG00009014 NA coding upstream 2156542 18219072 ~ 18220253 (+)
AMCG00009034 nlgn1 coding downstream 60101 20456457 ~ 20461014 (+)
AMCG00009035 nlgn1,LOC106584306 coding downstream 289789 20686145 ~ 20692387 (+)
AMCG00009038 NA coding downstream 601542 20997898 ~ 21087025 (+)
AMCG00009042 NA coding downstream 2033984 22430340 ~ 22441467 (+)
AMCG00009043 NA coding downstream 2216996 22613352 ~ 22631352 (+)
G53812 NA non-coding upstream 59761 20290778 ~ 20317034 (+)
G53803 NA non-coding upstream 104981 20263496 ~ 20271814 (+)
G53793 LOC107745311 non-coding upstream 163993 20136632 ~ 20212802 (+)
G53791 NA non-coding upstream 272795 20103780 ~ 20104000 (+)
G53764 NA non-coding upstream 346364 20030156 ~ 20030431 (+)
G53834 NA non-coding downstream 53373 20449729 ~ 20544953 (+)
G53855 NA non-coding downstream 235092 20631448 ~ 20724272 (+)
G53877 NA non-coding downstream 337999 20734355 ~ 20734623 (+)
G53878 NA non-coding downstream 363313 20759669 ~ 20759870 (+)
G53882 NA non-coding downstream 508697 20905053 ~ 20905348 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 829288 19527897 ~ 19547507 (+)
G53520 NA other upstream 1822835 18550772 ~ 18553960 (+)
AMCG00009009 NA other upstream 2456203 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 2646135 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 3033119 17330892 ~ 17343676 (+)
G53911 NA other downstream 771875 21168231 ~ 21168575 (+)
G53915 NA other downstream 878255 21274611 ~ 21275354 (+)
G53917 NA other downstream 895885 21292241 ~ 21293901 (+)
G54263 NA other downstream 3486961 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 4416262 24812618 ~ 24816534 (+)

Expression


Co-expression Network