Gene
RNA
| Item | Value |
|---|---|
| gene id | G53882 |
| gene name | NA |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030126.1 |
| NCBI id | CM030126.1 |
| chromosome length | 46242406 |
| location | 20905053 ~ 20905348 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU67372 | True | 296 | lncRNA | 0.60 | 1 | 20905053 | 20905348 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00009035 | nlgn1,LOC106584306 | coding | upstream | 212666 | 20686145 ~ 20692387 (+) |
| AMCG00009034 | nlgn1 | coding | upstream | 444039 | 20456457 ~ 20461014 (+) |
| AMCG00009032 | NA | coding | upstream | 641187 | 20263075 ~ 20263866 (+) |
| AMCG00009025 | atp11b | coding | upstream | 955618 | 19939076 ~ 19949435 (+) |
| AMCG00009026 | LOC107550661,LOC107566880 | coding | upstream | 989147 | 19861278 ~ 19915906 (+) |
| AMCG00009038 | NA | coding | downstream | 92550 | 20997898 ~ 21087025 (+) |
| AMCG00009042 | NA | coding | downstream | 1524992 | 22430340 ~ 22441467 (+) |
| AMCG00009043 | NA | coding | downstream | 1708004 | 22613352 ~ 22631352 (+) |
| AMCG00009049 | trpc1 | coding | downstream | 1727369 | 22632717 ~ 22648476 (+) |
| AMCG00009050 | u2surp | coding | downstream | 1764536 | 22669884 ~ 22686612 (+) |
| G53878 | NA | non-coding | upstream | 145183 | 20759669 ~ 20759870 (+) |
| G53877 | NA | non-coding | upstream | 170430 | 20734355 ~ 20734623 (+) |
| G53855 | NA | non-coding | upstream | 180781 | 20631448 ~ 20724272 (+) |
| G53834 | NA | non-coding | upstream | 360100 | 20449729 ~ 20544953 (+) |
| G53812 | NA | non-coding | upstream | 588019 | 20290778 ~ 20317034 (+) |
| G53884 | NA | non-coding | downstream | 4546 | 20909894 ~ 20910148 (+) |
| G53886 | NA | non-coding | downstream | 68629 | 20973977 ~ 20974187 (+) |
| G53895 | NA | non-coding | downstream | 132142 | 21037490 ~ 21037761 (+) |
| G53900 | NA | non-coding | downstream | 159810 | 21065158 ~ 21065997 (+) |
| G53912 | NA | non-coding | downstream | 326002 | 21231350 ~ 21231697 (+) |
| AMCG00009033 | nlgn1,LOC103399994,LOC102210587,LOC102311540 | other | upstream | 508697 | 20376795 ~ 20396356 (+) |
| AMCG00009022 | dnajc19,LOC107727073 | other | upstream | 1357546 | 19527897 ~ 19547507 (+) |
| G53520 | NA | other | upstream | 2351093 | 18550772 ~ 18553960 (+) |
| AMCG00009009 | NA | other | upstream | 2984461 | 17917548 ~ 17920592 (+) |
| G53298 | mybpc2 | other | upstream | 3174393 | 17729366 ~ 17730660 (+) |
| G53911 | NA | other | downstream | 262883 | 21168231 ~ 21168575 (+) |
| G53915 | NA | other | downstream | 369263 | 21274611 ~ 21275354 (+) |
| G53917 | NA | other | downstream | 386893 | 21292241 ~ 21293901 (+) |
| G54263 | NA | other | downstream | 2977969 | 23883317 ~ 23975906 (+) |
| AMCG00009085 | NA | other | downstream | 3907270 | 24812618 ~ 24816534 (+) |
