G54116


Basic Information

Item Value
gene id G54116
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22806239 ~ 22810596 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67649
ttccgcttcctgtttgtatgaaaggtgacgtctgcacaaagacttcctctttttgccctttgccttggttcgtcaagacagAACGGGCTCTGAAAACACCGGGACAACAGGACGAGGACAGCGAAGCTACGAGCAACACTGAatacaggataagagcaaagGATACTTTTGGGGATGAACATTTGTAGGTCAAAACACGGTTGTCTTCCAACGTTGGTCCAACCACTTATGATCCGTCGGGCAGACGTTGGCCCAAcgctgctgtgctatctggGGGGTGAGTGAGGGGACAATTCCACCTTTGTAGCTGAATAAGAAACAGATTccttcaaacacacaaagcagcaCAACAGGGATGAGGAGCTCTACGTGCCAACACACAACAGTTCATCTATGGGAGTAAAACGGCTTGCTTGTTTACAAAGATAATATTAGTGTACATGGGGGTGAGAAAAACTTTCCTGCAGGAAATTCCCAGGGATGAAGATAAGCAGACATTTGAAGACTTGAGAAGTCAACTACACTAAGGGAAGCTGATATTTTGGACATGAAACTGATTTTGTCTagtacaaataaatcaatttgaTTCTCTTTTGTTCTAAATCTT

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU67649 True 607 lncRNA 0.44 3 22806239 22810596

Neighbor

gene id symbol gene type direction distance location
AMCG00009052 chst2 coding upstream 100842 22704186 ~ 22705397 (+)
AMCG00009050 u2surp coding upstream 119627 22669884 ~ 22686612 (+)
AMCG00009049 trpc1 coding upstream 157763 22632717 ~ 22648476 (+)
AMCG00009043 NA coding upstream 174887 22613352 ~ 22631352 (+)
AMCG00009042 NA coding upstream 364772 22430340 ~ 22441467 (+)
AMCG00009053 LOC104937275,LOC102787465 coding downstream 40395 22850991 ~ 22854494 (+)
AMCG00009056 zic1 coding downstream 847605 23658201 ~ 23662213 (+)
AMCG00009058 NA coding downstream 1006229 23816825 ~ 23825087 (+)
AMCG00009059 NA coding downstream 1014626 23825222 ~ 23840982 (+)
AMCG00009061 NA coding downstream 1062112 23872708 ~ 23885824 (+)
G54101 NA non-coding upstream 98395 22707141 ~ 22707844 (+)
G54063 NA non-coding upstream 115059 22689938 ~ 22691180 (+)
G54032 NA non-coding upstream 202762 22534593 ~ 22603477 (+)
G54031 NA non-coding upstream 263477 22521056 ~ 22542762 (+)
G54030 NA non-coding upstream 278156 22519866 ~ 22528083 (+)
G54138 NA non-coding downstream 165865 22976461 ~ 22976682 (+)
G54166 NA non-coding downstream 358845 23169441 ~ 23191582 (+)
G54174 NA non-coding downstream 424027 23234623 ~ 23235029 (+)
G54194 NA non-coding downstream 636558 23447154 ~ 23449477 (+)
G54237 NA non-coding downstream 852797 23663393 ~ 23664094 (+)
G53917 NA other upstream 1512338 21292241 ~ 21293901 (+)
G53915 NA other upstream 1530885 21274611 ~ 21275354 (+)
G53911 NA other upstream 1637664 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 2409883 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 3258732 19527897 ~ 19547507 (+)
G54263 NA other downstream 1072721 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 2002022 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 2087520 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 2679115 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 2774286 25584882 ~ 25587615 (+)

Expression


Co-expression Network