CI01000071_05142025_05161947 (RNFT2)


Basic Information

Item Value
gene id CI01000071_05142025_05161947
gene name RNFT2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 5142025 ~ 5162294 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000071_05142025_05161947.mRNA
TTTTGGAGCTCCTGGTGATAAAGTGGGTGCCATGCAGAGACGCCACAGCAGCAACACTGAGGGCATGCCGCCAGAAAGGAACAGGAGTCAAACTCTCGGTTCAGAGAGCAGTCTTGATGAAGGAGGAGTGTTTGACTGTCTGAAGCCAGACTCTCCTACGTCGCCCCAGCAGCTCTTCTCTGGTCTGCTCAAGGCTGTGGTCACATGGCTTCAGAGAGGATTCCCTTTTATCCTCATTCTCCTCGCTAAAGTCTGCTTTCAGCACAAGCTCGGAATTGCTGTTTGCATTGGAATGATCAGCACATTTGCCTTTGCTAACTCAACGCTGAAGCATCAGGTGGCATTGCGAGAGGAGAGGTCTGTGTTTACCACTCTCTGGATTATGATCTTTCTCGCTGGCAACATTGTATATGTGTACTACACGTTCAGTGTTGAGGAACTTCACAACAGCCTTATTTTTGCTAAGCCAAACATCAACAGTTTTGATTTCTTTGACCTGATCTGGGCTGTTGGAATAACAGATTTTGTGCTGAAATATTTCACCATCGAGCTCAAATGCCTCATACTGTTCCTGCCTAAAATGATCCTCGCTTTCAAGTCCAGGGAACTTACTGCTGTTCCTGCCCATATTACACTTCCAGCTATTAACTTCAACTCCCAGTCATCTCCATACCCACCCCCTGAAACCAAACACACTCTTTCCACCTCTTGTATCAAGCCCAGCCTTGAAGCAGTTTCTGTGTGGCACAAAGCAAAGGTGGATGTTGCATTTGTCACAGAATACATGTGTTTTCCCTGTGCAGTATGGCCTCTTGCATCTGGTGGCCTCTGTCTTCTCATCATAATTCGGCATGTGGTCAACCATATCATACTGCACTTCATTGTGAGCGAGTATAGGGCTGCAGGGACTCTGGCTAAGATAAATTGCTTGCGTACGGAGGTTACAGATCTCCGTCACTCAGCTAGCAAGCTCCCCAACAGGGTGATTAATCGCTGTCAGGGGAAGTTTTATCTGCTCATAGAGGAGCTGAGTCAACTTTTCAGAGCTTTGGTTCCCATCCAGCTGTGGTACAAGTACATCATGGGTGAAGATCCATCCAGCAGCTACTTCCTGGGGGCAACGCTGATTATCATTTACAGTCTTTGTAAGTCATTTGATTTGTGTGGAAGAATATCTGGCATTCGAAAAGCATTCGCCATTCTCTGTAGCTCACAGAGTTACGGTACGAGAGCAAGTTCTCAGCAGTGCAGTGAGGCTGGTGATGTGTGTGCAATCTGCCAGGCTGAATTCAGAGAGCCAATCGCTCTGCTCTGTCAGCATGTGTTCTGTGAGGAGTGTTTATGCCAGTGGTTTGACCGTGAAAGAACGTGTCCGCTGTGTCGGTCAGCGGTGGTCGAAACTCTGCGTAACTGGAAGGATGGGACAACGTCTGCACACTTTCAGATCTACTGAACGGAGACCCAGCTAAATGACAAAGGTTTTCTGGTCCACTTGAATCAGATGAAACATGTTCACCAGGCATAAAACATTGCTGTTTGTAATGTTGTATGATGAAACATGGCAGTGTACTGTAGGGAAGCGTGACAATATGTTACATTGTTGAATGTACAATAGCACCATAACATTATGTCTGATAACAGAGTTAAAAAAGTCTGTTTTGTCTTCTTATACATGCTTTTCAACAAGTAAAACTTGCATTTATAATATTATTATTATTATTATTATTATTATTATTATTATTATTATTAAGCATGATAATCAATTGTTTTGTAACACTTTTTTTGGGTTTATCCAAGCTA

Function

symbol description
rnft2 Predicted to enable ubiquitin protein ligase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RNFT2 (ring finger protein, transmembrane 2).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000071_05142025_05161947.mRNA True 1800 mRNA 0.44 13 5142025 5162294

Neighbor

gene id symbol gene type direction distance location
CI01000071_05102723_05110135 GATSL3 coding upstream 31805 5102723 ~ 5110220 (+)
CI01000071_05082669_05087793 NIPSNAP1 coding upstream 54208 5082300 ~ 5087817 (+)
CI01000071_05081168_05081463 NA coding upstream 59872 5081168 ~ 5082153 (+)
CI01000071_05002535_05056745 NOS1 coding upstream 84617 5002189 ~ 5057408 (+)
CI01000071_04982029_04982493 NA coding upstream 159485 4981356 ~ 4982540 (+)
CI01000071_05167170_05195192 FBXW8 coding downstream 4133 5166427 ~ 5195429 (+)
G283570 NA non-coding upstream 26860 5113597 ~ 5115165 (+)
G283580 NA non-coding upstream 76018 5065791 ~ 5066007 (+)
G283557 NA non-coding upstream 77112 5064632 ~ 5064913 (+)
G283457 NA non-coding upstream 152321 4982595 ~ 4989704 (+)
G283422 NA non-coding upstream 171836 4969068 ~ 4970189 (+)
G282080 NA other upstream 2085494 3056084 ~ 3056531 (+)
CI01000071_02815324_02834097 NA other upstream 2313421 2815127 ~ 2835525 (+)
CI01000071_01374449_01376813 NA other upstream 3764355 1373996 ~ 1377670 (+)
G280443 NA other upstream 4219929 905217 ~ 922096 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 other upstream 4338708 791346 ~ 803317 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location