RNA id: CI01000071_05142025_05161947.mRNA


Basic Information

Item Value
RNA id CI01000071_05142025_05161947.mRNA
length 1800
RNA type mRNA
GC content 0.44
exon number 13
gene id CI01000071_05142025_05161947
representative True

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 5142025 ~ 5162294 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTGGAGCTCCTGGTGATAAAGTGGGTGCCATGCAGAGACGCCACAGCAGCAACACTGAGGGCATGCCGCCAGAAAGGAACAGGAGTCAAACTCTCGGTTCAGAGAGCAGTCTTGATGAAGGAGGAGTGTTTGACTGTCTGAAGCCAGACTCTCCTACGTCGCCCCAGCAGCTCTTCTCTGGTCTGCTCAAGGCTGTGGTCACATGGCTTCAGAGAGGATTCCCTTTTATCCTCATTCTCCTCGCTAAAGTCTGCTTTCAGCACAAGCTCGGAATTGCTGTTTGCATTGGAATGATCAGCACATTTGCCTTTGCTAACTCAACGCTGAAGCATCAGGTGGCATTGCGAGAGGAGAGGTCTGTGTTTACCACTCTCTGGATTATGATCTTTCTCGCTGGCAACATTGTATATGTGTACTACACGTTCAGTGTTGAGGAACTTCACAACAGCCTTATTTTTGCTAAGCCAAACATCAACAGTTTTGATTTCTTTGACCTGATCTGGGCTGTTGGAATAACAGATTTTGTGCTGAAATATTTCACCATCGAGCTCAAATGCCTCATACTGTTCCTGCCTAAAATGATCCTCGCTTTCAAGTCCAGGGAACTTACTGCTGTTCCTGCCCATATTACACTTCCAGCTATTAACTTCAACTCCCAGTCATCTCCATACCCACCCCCTGAAACCAAACACACTCTTTCCACCTCTTGTATCAAGCCCAGCCTTGAAGCAGTTTCTGTGTGGCACAAAGCAAAGGTGGATGTTGCATTTGTCACAGAATACATGTGTTTTCCCTGTGCAGTATGGCCTCTTGCATCTGGTGGCCTCTGTCTTCTCATCATAATTCGGCATGTGGTCAACCATATCATACTGCACTTCATTGTGAGCGAGTATAGGGCTGCAGGGACTCTGGCTAAGATAAATTGCTTGCGTACGGAGGTTACAGATCTCCGTCACTCAGCTAGCAAGCTCCCCAACAGGGTGATTAATCGCTGTCAGGGGAAGTTTTATCTGCTCATAGAGGAGCTGAGTCAACTTTTCAGAGCTTTGGTTCCCATCCAGCTGTGGTACAAGTACATCATGGGTGAAGATCCATCCAGCAGCTACTTCCTGGGGGCAACGCTGATTATCATTTACAGTCTTTGTAAGTCATTTGATTTGTGTGGAAGAATATCTGGCATTCGAAAAGCATTCGCCATTCTCTGTAGCTCACAGAGTTACGGTACGAGAGCAAGTTCTCAGCAGTGCAGTGAGGCTGGTGATGTGTGTGCAATCTGCCAGGCTGAATTCAGAGAGCCAATCGCTCTGCTCTGTCAGCATGTGTTCTGTGAGGAGTGTTTATGCCAGTGGTTTGACCGTGAAAGAACGTGTCCGCTGTGTCGGTCAGCGGTGGTCGAAACTCTGCGTAACTGGAAGGATGGGACAACGTCTGCACACTTTCAGATCTACTGAACGGAGACCCAGCTAAATGACAAAGGTTTTCTGGTCCACTTGAATCAGATGAAACATGTTCACCAGGCATAAAACATTGCTGTTTGTAATGTTGTATGATGAAACATGGCAGTGTACTGTAGGGAAGCGTGACAATATGTTACATTGTTGAATGTACAATAGCACCATAACATTATGTCTGATAACAGAGTTAAAAAAGTCTGTTTTGTCTTCTTATACATGCTTTTCAACAAGTAAAACTTGCATTTATAATATTATTATTATTATTATTATTATTATTATTATTATTATTATTAAGCATGATAATCAATTGTTTTGTAACACTTTTTTTGGGTTTATCCAAGCTA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321372 lncRNA upstream 26860 5113597 ~ 5115165 (+) False G283570
TU321375 lncRNA upstream 26860 5113773 ~ 5115165 (+) False G283570
TU321373 lncRNA upstream 26860 5113881 ~ 5115165 (+) False G283570
TU321374 lncRNA upstream 27559 5113881 ~ 5114466 (+) True G283570
TU321385 lncRNA upstream 76018 5065791 ~ 5066007 (+) True G283580
CI01000071_05102723_05110135.mRNA mRNA upstream 31805 5102723 ~ 5110220 (+) True CI01000071_05102723_05110135
CI01000071_05082669_05087793.mRNA mRNA upstream 54208 5082300 ~ 5087817 (+) True CI01000071_05082669_05087793
CI01000071_05081168_05081463.mRNA mRNA upstream 59872 5081168 ~ 5082153 (+) True CI01000071_05081168_05081463
CI01000071_05002535_05056745.mRNA mRNA upstream 84617 5002189 ~ 5057408 (+) True CI01000071_05002535_05056745
CI01000071_04982029_04982493.mRNA mRNA upstream 159485 4981356 ~ 4982540 (+) True CI01000071_04982029_04982493
CI01000071_05167170_05195192.mRNA mRNA downstream 4133 5166427 ~ 5195429 (+) True CI01000071_05167170_05195192
TU319744 other upstream 2085494 3056084 ~ 3056531 (+) True G282080
TU319630 other upstream 2313421 2804644 ~ 2804806 (+) True G281974
TU318234 other upstream 3764355 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 4219929 905217 ~ 922096 (+) True G280443
TU318001 other upstream 4338708 799775 ~ 799876 (+) True G280464

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060028 False 1461 mRNA 0.51 11 NC_007116.7 11917575 ~ 11944398 (-)