RNA id: CI01000071_05167170_05195192.mRNA


Basic Information

Item Value
RNA id CI01000071_05167170_05195192.mRNA
length 2957
RNA type mRNA
GC content 0.46
exon number 12
gene id CI01000071_05167170_05195192
representative True

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 5166427 ~ 5195429 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATAAAAGGGATTTAATTTACCCAATTTCATGAAATCCTATTAGCTGCAGAAACAACAAAACAAAATATGAACCATATAGATATACATAATGAACCATAGTCCAGATTAATTCTTTCAGTATATTTGTCAATAGTTATACTAAAATTTGTAAACGGAAATAGGCCTACATAATATTTTGTCAATATAAATTACACAGTTATGTATATCTGATGATGCTGACACATATTTAGTGATAAACACACATTTAGTAAGAGATGCTGAACACATCCAAAACAATCTGATGCCTTTATTGTTTCCATTTTGAAGCCTTTCTCTCAGACCTCAGTAATCAGTGATGTAACATATTTTTGCTTCAGACAAACATGTAGAATAGAGCAGACGTCTAGCCATTTTGTCTCGAACATTTATACATTTAATGTTTGTCTTATACACATGTAGTTATTCGTAATATAGCGCGTGCAGGATTTTTTTGCAGCTGATGATGCTCGAAATGCTGTCTATGTAGACAGCTCATTAGTCTCTGAGACACAACCATTGTCTTTTGTTGTAAATAATTGTTCTTTTGGTTGGGTGAGGAATATGCGCCATGCGGAACACTTTACGTGAACATGATGTTCCAGCCGAGGCCATTTCGCGGTCGGATCACTGTTTGTTTTGATGGCAACAGCGGTATTCCACAAGACTTGCGTTTGAATATGAAATTTATAAATATGAATGAAAAAACAACGTGATTAAAAGGGGATGGACGAGGATGAGCTTTTGGCCTTTCGAGAGCGCTGGAAACAGGAGTTAAAGAAAAACCCCAAGACATCCGGTAAAGACAAAGAGGGATATTTTGGGCATCTCAGTAAAGACAGTTCATCTGTTCACCAAAGCACTAGCTTTTGGGAGAAGCAGAGCAATGCGTCCCAGCAAACTCAGCCCACAGCAAAAGACCTGCCGGAGTACGTGTCGATCGCCGAGGGTTTGTTGGACGGCAGAAGCAGTCCACTACTGGACAGAATCGAGCAAGAGAGAACGCGCAGGAAGCGCGCTCCCGACAGCGATGCGCTCAACACAGACGCGCCCCCCAAAAAAGAAAACAAGTGCCAGAAACTGCTTGAGCAGTTCCTTCAGGACCTGAATGAGGTGAATGACATCCCATTCTTTGATGTGGAGTTGCCCTATGAGCTAGCGCTAAAGATTTTCCACTTCCTGGGCAGAACGGATCTAGGACGATGTGCTCAGGTGAGTAAATCCTGGAAGGTGCTGGCTGAGGATGAGGTCCTGTGGCATAGATTGTGTCTGGAGGAAGGTTATAACAATGGGGCAAGTATCTCTGACTCCCCCTGCTGGAAGAGCACGCTCAGAGACTGTCGCAACACAGAGAATGTGGTCAAGTCAAACTGGAAGAATCGTGTTGGATCCATTCGTCACCTGCAGTACGAGTTAGGAAAGGTGTTGTGTGATGTCAGTTCCTGTGCTGGTCTTGTTATCGCTGGCTACAGCTCTGGGGATGTCCGTCTGTGGGACACTCTTCACTGGGACAAATCATACCTGCACACCACACATTCCATCAGAGATGAAACCCCTGCACCTTACGTTAGTCATGTACGTGTCAATAAGACTGTAGCCACAGCTGCTTATGAGAATGGGTGTGTAGATGTGTGGAGCACTGAAACCTGTCTTGAGCCCATTCACCAGTACCAGCACCTCCGTAGGGTTCATGCACTGGATCTAAGTCCTGACAGTCCGGCTTTGGCCTCTGCATCAGGACCAGATGTGCGGGTGGACGCACCAGATGAGAAGGGCTACTGGAGATCACAATGTCTCGTTCAGTTGCCAATGCCTGTAGATGGGGTATTGGTGGTGCCAGGGAGACGGGATTTCCCTTTGGTCACAGTATGGGCAGGTGAGAGTGTTTACCTGCTGGATTCCAAATGGAAGGAAGAACAGGAGCCAAGAATTCTTCACTATGTGTACGGCCATCCAGTGACCTGTGTGGACGTGTCACCCTGCAGAGCTGCACTGGGGATCAAGAGCTGCGGATGGGGCATGAATGACGGGGGCAACAAGATTCAGGTGTACAGCCTGGAGACCAGCCAGTGTGAGCTGACCGTGGGGAACTCGGCGGGAGACTTCACCTGCGTCAACCTGAGAGACAGCCCTCCTCACCTGCTGCCTCAGTGCTGCGGAGAGAGAGAAATCTCTGTTTGTGTTGTTCTGCCTGATTGGATCTGCCTGGACAGACATCTGTACAGGAAGTGTATACGGATAGGAGCCATAAGTGATGGAGTGAGAGTGTTTGACTTGCGTACTGGCTCCTCAGTCGTCTCTTTATATGCCCATCACATGGGCGTGACCACCGTCCAGGCAGATGATTGGAAGGTTGTGAGCGGAGGTGGTGAGGGATTGGTCAGTGTGTGGGAGATGAGGATAGGAGCCAAACTCTGGGAAATGCATAACAGGCACCCGGTTCGCCACATACGGTTCAACAGCAGCACTCTGGTGACGGCCAACATCCCTGATGAGAAGAACCCTCGCGGGGCTTGTATCACAGACGATGACCTCACCGCTCACCGCAGATACAGAGGGCTGATCTGTCACTATGACTTCTCAATGGACTCATCTGCACAGGATCACATCCTGCCCATCTGTAGGTCCAACTACACAGAGTCCTCTGGCTACAGCTATAACATTGGCTTGGCGATGCCTTATGACATACTGAAGGGCCCTTAGATTGGCATCTGATACACTGTGCTTTTGGGGCAAGTTGGACTGGAAAGATTGAATTTGCTCTTTTAAGATGATCTGGGGTCATATTTCTTAAAACTAATTCTTTATTTAACCATAATTTGTGTAAATTCAAAACTTTGGATGACACATTAAGATGTGTTTGAGGACTAGAATTACTAGATCTTTGTTTTTATAAATTGTATCATGTTCTGTCCTTGCACATTTTAGTATATAATACTA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K10264 FBXW8; F-box and WD-40 domain protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321372 lncRNA upstream 51262 5113597 ~ 5115165 (+) False G283570
TU321375 lncRNA upstream 51262 5113773 ~ 5115165 (+) False G283570
TU321373 lncRNA upstream 51262 5113881 ~ 5115165 (+) False G283570
TU321374 lncRNA upstream 51961 5113881 ~ 5114466 (+) True G283570
TU321385 lncRNA upstream 100420 5065791 ~ 5066007 (+) True G283580
CI01000071_05142025_05161947.mRNA mRNA upstream 4133 5142025 ~ 5162294 (+) True CI01000071_05142025_05161947
CI01000071_05102723_05110135.mRNA mRNA upstream 56207 5102723 ~ 5110220 (+) True CI01000071_05102723_05110135
CI01000071_05082669_05087793.mRNA mRNA upstream 78610 5082300 ~ 5087817 (+) True CI01000071_05082669_05087793
CI01000071_05081168_05081463.mRNA mRNA upstream 84274 5081168 ~ 5082153 (+) True CI01000071_05081168_05081463
CI01000071_05002535_05056745.mRNA mRNA upstream 109019 5002189 ~ 5057408 (+) True CI01000071_05002535_05056745
TU319744 other upstream 2109896 3056084 ~ 3056531 (+) True G282080
TU319630 other upstream 2337823 2804644 ~ 2804806 (+) True G281974
TU318234 other upstream 3788757 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 4244331 905217 ~ 922096 (+) True G280443
TU318001 other upstream 4363110 799775 ~ 799876 (+) True G280464

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060026 True 2231 mRNA 0.50 11 NC_007116.7 11864429 ~ 11905920 (-)