RNA id: TU318001


Basic Information

Item Value
RNA id TU318001
length 102
RNA type TUCP
GC content 0.36
exon number 1
gene id G280464
representative True

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 799775 ~ 799876 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTATTAACAGATTCAGCAATGATATCAAGTCAATGTTGGGATATACTCCAGGATTGTTCTGGAAAGTTTGTTGGGTTGCCATCAGCCCTGCATTTCTTGCTTACATTATTATCAGCTCACTGCTGAACCCTCAACCCCTCACGCTATTCGACTACAAGTTCCCAGACTGGAGCATCACGGTTGGTTTTGTCATTGGAGCTTCCTCCTTCATATGGATCCCCATATACATGGTGTACAAGCTCGTGTGGACCCCAGGCTCTCTTAAACAGCGCCTTGCTGTATGTCTGCGACCGGAGAGAACACTGCCAGATATCCACGCTGACAGTATGGGGTTAAGTCCTGTACCTTAGACCACTGAGAGAAAAACACAATGTGCATAAAAAGGCCACATATAGTGGGTTACATGTGTCCACAGCAAACTAAGAGTTTATTATAAGGGTAAAGAGCAACTTTGGCATAGTTTCAGGGATTTGTCCATTTGAAATCACCAATCAAGAATGATCTATTTGAAAGTGATGTACAATTAGATTTAATATAAAAAAAATTAAAACTGATGTTCACTTTAAGTTAAAGTCCCTTATTTAACATGCTGTGCAATTTACAAATGGTTGATGTTCTTTTTTTAATTTAAGGTTTACGTATAAAATGAAGAGTTCAGTGGTATTTTTTACATTGTAAGTCATATATACATTCCAGGTCACAGAACGTTTTTTGACATACATGCAAGTGAGATTACCTCATTGTGAGAAATTCAGCCAATGAGAAAATGAGAACAGAGAACTTCATATACATTTCTCGCTCATTTATTTATTTATTTTTTTTAAGAAATAACTATTGTCAAGATTTAATCATTATGGTGTTTTCTGCCTTAACTCTGCCTAAATATTGTAGCTACTTTATGTCAAAACTTTGTTAAACCTGTATTGATATTGTGCCTCACCAAGAAAAGGAAAAATGACAAAAATAAGGTTTTCTTCTGTTCCTCATTTGGAACTAACACTACATGACTGTTTGAAATGTTCATTCTCTAACAGAACTTGAGCCCAAATCCTAGCTATGTGTAACGTGTTAATTTTCTTCCCACATTTTTTCCAAATAAAGAACTGAGGATGTTACTGAACTCTGGATGGGACCAAATACTAAATTGCTATGAATGTCTTATTATGGATAGTTGAAAATGTGGTTCATATACTATGTCTGCACTGTAGGTTGTGGCAGAGAGTTTTGCTTGTATATATGTCTGAAAAAAATTAATAAAGCTGTACTGAATATTCGTATCTACC

Function

GO:

id name namespace
GO:0051610 serotonin uptake biological_process

KEGG:

id description
K05037 SLC6A4, SERT; solute carrier family 6 (neurotransmitter transporter, serotonin) member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU317923 lncRNA upstream 23664 737965 ~ 776111 (+) True G280413
TU317921 lncRNA upstream 72405 726653 ~ 727370 (+) True G280411
TU317839 lncRNA upstream 78539 712275 ~ 721236 (+) False G280336
TU317820 lncRNA upstream 78733 567526 ~ 721042 (+) False G280336
TU317823 lncRNA upstream 78733 571107 ~ 721042 (+) False G280336
TU318005 lncRNA downstream 3851 807168 ~ 808023 (+) True CI01000071_00807216_00807677
TU317986 lncRNA downstream 95501 898818 ~ 899610 (+) True G280449
TU318014 lncRNA downstream 99550 902867 ~ 903174 (+) True G280477
TU318015 lncRNA downstream 100466 903783 ~ 904013 (+) True G280478
TU318016 lncRNA downstream 101315 904632 ~ 904864 (+) True G280479
CI01000071_00707882_00708320.mRNA mRNA upstream 90500 706888 ~ 709275 (+) False CI01000071_00707882_00708320
CI01000071_00544529_00545575.mRNA mRNA upstream 253934 544249 ~ 545841 (+) True CI01000071_00544529_00545575
CI01000071_00531716_00534432.mRNA mRNA upstream 264813 530382 ~ 534962 (+) True CI01000071_00531716_00534432
CI01000071_00335696_00339048.mRNA mRNA upstream 460202 335049 ~ 339573 (+) True CI01000071_00335696_00339048
CI01000071_00329399_00333840.mRNA mRNA upstream 465291 329399 ~ 334484 (+) True CI01000071_00329399_00333840
CI01000071_00807216_00807677.mRNA mRNA downstream 3514 806831 ~ 808142 (+) False CI01000071_00807216_00807677
CI01000071_00825247_00853236.mRNA mRNA downstream 21622 824939 ~ 853754 (+) True CI01000071_00825247_00853236
CI01000071_00867024_00871868.mRNA mRNA downstream 63524 866841 ~ 873319 (+) True CI01000071_00867024_00871868
CI01000071_00880705_00897817.mRNA mRNA downstream 77388 880705 ~ 898445 (+) True CI01000071_00880705_00897817
CI01000071_00923006_00927912.mRNA mRNA downstream 119435 922752 ~ 928488 (+) True CI01000071_00923006_00927912
TU317961 other downstream 101900 905217 ~ 922096 (+) True G280443
TU318234 other downstream 571266 1375724 ~ 1375792 (+) True G280680
TU319630 other downstream 2001327 2804644 ~ 2804806 (+) True G281974
TU319744 other downstream 2252767 3056084 ~ 3056531 (+) True G282080

Expression Profile