RNA id: CI01000071_00923006_00927912.mRNA



Basic Information


Item Value
RNA id CI01000071_00923006_00927912.mRNA
length 1571
RNA type mRNA
GC content 0.48
exon number 4
gene id CI01000071_00923006_00927912
representative True

Chromosome Information


Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 922752 ~ 928488 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGATAAATAGCTCTTTTTTAACTTGAAATCAGGCACCTAAGGCATTATTAAACCAGTGCTTTGTGAAATTAATTTGGCCTTTCTATTGTTCAAAATTGGGTTACCCTTGGAGACGGAAAGGAGAGCGAGCAGGAAGTAAGGAGGATAAAAGACTTGTTTAATTGCACTGACACATTTGAGATTTATAAGTAGCACCAGTAGGTCTTAGCCCTGGCCAGGCCAATTTCTCAATTATTCAATCAGACCATCTCCAAATGAAGAGACAGACCTACATTACCCCTCCCACAAACCCCCAAAAACTCTACTCCCTGGGAATTCGTAACCGGGTTTTTTTCAGCCTGTACAGAGAAACTGGTTTTGAATTAGGCGTTTTCAGAGAAACCTGGGGCTTTTGGGATTCTGAGAAAAACGAGTTGGGGAAACAAGGAGAAAGAGCAGCGAGAGGCAGTGCAGAGGATGAGCGGAGGCAAAAGCCTCCAGCACCTGACCTGCCATCAAAGGGTTTCACACTTCACAGGCCACAGGGATTAGATGCCTTTCAGACCCATAGAGAGCTGCTCCAACCCACAAAGGCCTCTGGCCATTACTGCAGCTATGAGCACAACGCAGGAGAGAGAAAGAGAGGTTTGAGCGAGCGTATTCAGTCATGCATTGTGCCTTTTCCCTCTTCTGGCATACGGACAAATGATCCCATCCTGCCAGGCACAAAGCGCTCGGGGAGGACGGGAGGGGAAGATTGCGGGAAACGGGATGGCAGGGGGATAATTAGCGGAATGACCTCTGTCCTTAATCACTCGCGGCTGGCACTGAGTGCCCGTGTGTCAGAGCGGCAGTTCTCTAAATGCCATCTCTCATTACCGCCGACGCACACCAACCAGAGAGGACTTGCACATACACAAAAACACATAAAGACAACAGGACCTGATCTCCGCAATCTCCCTGCCATCCCGCTGCAGTCTCACATGGCAAACGGACACCTGCAGGCTGAACACTGACGTCCTGTCATGGGGTAGATGGGTCAGGGTGAGCGGGGCTAGGAAAGGCCTGGGTCAGCTTTGGATGCAGGTGCAACGGAAGCCATACGGATAACGCACGTCCTTCACGCTGCCTGGACCGCCCTTGAGCGAGCAGGCAGTGTGGAGGAGGCATAATCCTAAATACTCAATTAACACTACTCTAATTAGCAGCAAGAGTGCGTGTGTGCTGGAGGGGGGCATCAGAGGGATATGAGTGAATGTGAGGGGGAAGAAAATTGCAACTGGAGATCCTAAAAAATGGGAATTGTCTATGTAGGCTGTTTATTCGTTCTTTAAAGCAATGCATCAAGGCAAAGAAAGAAAAAGAGAGCGAGTAAGGGGCCAGATGTGTGCATGCATCCTCAGGGAGGCGTCTGCAGGAAATGATGCAGAGATGAAAGAGAAGTGGTGACACAAAATAACTGAATATTTTCAGAGCGTCGCATTTACAATTAACTTCCCACGAAGAGTAGCACTCTACAGAAGCACAGATGACGTTGAACACTTCAGCCCTATAAATATGTGAAGCATCTGTAACGGTTGAGAAGTGAAAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU318016 lncRNA upstream 17888 904632 ~ 904864 (+) True G280479
TU318015 lncRNA upstream 18739 903783 ~ 904013 (+) True G280478
TU318014 lncRNA upstream 19578 902867 ~ 903174 (+) True G280477
TU317986 lncRNA upstream 23142 898818 ~ 899610 (+) True G280449
TU318005 lncRNA upstream 114729 807168 ~ 808023 (+) True CI01000071_00807216_00807677
TU318043 lncRNA downstream 12907 941395 ~ 943005 (+) True G280505
TU318078 lncRNA downstream 82044 1010532 ~ 1010771 (+) True G280537
TU318101 lncRNA downstream 126310 1054798 ~ 1055116 (+) True G280558
TU318103 lncRNA downstream 130501 1058989 ~ 1059265 (+) True G280560
TU318104 lncRNA downstream 131193 1059681 ~ 1059906 (+) True G280561
CI01000071_00880705_00897817.mRNA mRNA upstream 24307 880705 ~ 898445 (+) True CI01000071_00880705_00897817
CI01000071_00867024_00871868.mRNA mRNA upstream 49433 866841 ~ 873319 (+) True CI01000071_00867024_00871868
CI01000071_00825247_00853236.mRNA mRNA upstream 68998 824939 ~ 853754 (+) True CI01000071_00825247_00853236
CI01000071_00807216_00807677.mRNA mRNA upstream 114610 806831 ~ 808142 (+) False CI01000071_00807216_00807677
CI01000071_00792254_00802384.mRNA mRNA upstream 119623 791346 ~ 803129 (+) False CI01000071_00792254_00802384
CI01000071_00965582_00968758.mRNA mRNA downstream 36513 965001 ~ 969361 (+) True CI01000071_00965582_00968758
CI01000071_00971517_00971823.mRNA mRNA downstream 42549 971037 ~ 972217 (+) True CI01000071_00971517_00971823
CI01000071_01086147_01088260.mRNA mRNA downstream 157659 1086147 ~ 1088399 (+) True CI01000071_01086147_01088260
CI01000071_01113148_01115596.mRNA mRNA downstream 184660 1113148 ~ 1116722 (+) True CI01000071_01113148_01115596
CI01000071_01139373_01146663.mRNA mRNA downstream 210576 1139064 ~ 1146678 (+) True CI01000071_01139373_01146663
TU317961 other upstream 656 905217 ~ 922096 (+) True G280443
TU318001 other upstream 119435 799775 ~ 799876 (+) True G280464
TU318234 other downstream 446095 1375724 ~ 1375792 (+) True G280680
TU319630 other downstream 1876156 2804644 ~ 2804806 (+) True G281974
TU319744 other downstream 2127596 3056084 ~ 3056531 (+) True G282080

Expression Profile