RNA id: TU321375


Basic Information

Item Value
RNA id TU321375
length 1393
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G283570
representative False

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 5113597 ~ 5115165 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACATTTGAAGTGGATCAAAACCTTTCATCAAAGTTGTCCTAAAACCTTCTTCTTAGGACAACTTAGTTCTTAGGACAACTTTGATAAACTTTTTTGATCCACTTCAAATGTTGACTACTGTAGTTTATAGTTTATAAAACTTTTTTCTGACCTGGACTTTGAAAAATATAATATATTGATTTATAATTTATTTTATAATTTAATAATCTTATTTTATATTTTTGAGTGAATTGAATGACCTGGATTTGTTTTTGTGGGATACACCCATTTTTGAGTAATCCAGATATGCGACTTTTGAATTTCTTCATGTTAAGTTTATCAGGATCTTTTGATTCGCTTTTATTTGACCACAAACCGATAAGAATGAGAGTTGAAGTTGTAGTGTCGCTTTGTCAACTGATCTACAGTTTGATAAAGAAATGACTCTTATACGACTGTCTGCCTAATGACGACGTTAAGTTTGACTCTTCTTGTGACATTTCTGCCTTTTTGCTAGCTCTAAAACATGCCCAGCTCCGGTGTGGCCTTACAGTTTCGCTTGCTATTTGTTTAATGTGAGAATAGGCTGCTGTTTTGTGACATATTTTGGTCACTACTAGTGAACCATGCACAATACATACACAAATAGTAATCAAATCAAAGAAACTGATTTGAAACAATTGTTCATATAACCTTTTGATTATTGAGGGGCCCAAAAATGCTTTTAAAATGGCATTGAAAACTTATTCCAGCTATCTTTATAATGAGCTAATGCAGAATCTCAGCTGTAGGGGTTCATGCAACAAGAAATGCACTAATTGATTTATATTTTGTTTCGCACAATCACTAATAAATCCAGGAATCATATCTGGTAAATGAATGAAGCTCTTTCTAGAGAGAAATATATCTTTGTTACAAATAAGCTTAATGTTTTGAAAGAGATACTGAAACAGAAACACTAGCATCAACATATAGATTATTAGATTAATGATTAGGGTTACTTTGTGCGTGCGTGCGTGCAAGACTTTCTGCTTTTGCTAACACTTTTTTTATGTTAATGGTTTTCTTTATATAGTGATAGAGTTTTTCAGGGCACCAAAGCAGCATTAGAATAATTGTCAAGGTGCTTTTTGAGATCATGGTTTGAAGAAAATTGTATATTAAGAAAAATATTTGTTACTCCAATGCGATTAAGGAGTTATTTTCATATGTTTATTTTATCTCATTTCTACAATATTGGTAAAGACCAAGGTTACTGGCATGTTAAAACAAATTTTTAAAGGTCAGTAACAATTTTGAGCATTTGTTGTTCTTTCTTGCTTTTTGTAGATTAGGTGCATTTATCTAAAATCATTTTTGGTACATTTTATACAGTGTCAAAGGAATTACATAACATGTTTGTAACTGTGCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321385 lncRNA upstream 47766 5065791 ~ 5066007 (+) True G283580
TU321358 lncRNA upstream 48860 5064632 ~ 5064913 (+) True G283557
TU321238 lncRNA upstream 124069 4982595 ~ 4989704 (+) True G283457
TU321200 lncRNA upstream 143584 4969068 ~ 4970189 (+) True G283422
TU321201 lncRNA upstream 148332 4962938 ~ 4965441 (+) True G283423
TU321382 lncRNA downstream 29597 5144762 ~ 5196867 (+) True G283577
CI01000071_05102723_05110135.mRNA mRNA upstream 3553 5102723 ~ 5110220 (+) True CI01000071_05102723_05110135
CI01000071_05082669_05087793.mRNA mRNA upstream 25956 5082300 ~ 5087817 (+) True CI01000071_05082669_05087793
CI01000071_05081168_05081463.mRNA mRNA upstream 31620 5081168 ~ 5082153 (+) True CI01000071_05081168_05081463
CI01000071_05002535_05056745.mRNA mRNA upstream 56365 5002189 ~ 5057408 (+) True CI01000071_05002535_05056745
CI01000071_04982029_04982493.mRNA mRNA upstream 131233 4981356 ~ 4982540 (+) True CI01000071_04982029_04982493
CI01000071_05142025_05161947.mRNA mRNA downstream 26860 5142025 ~ 5162294 (+) True CI01000071_05142025_05161947
CI01000071_05167170_05195192.mRNA mRNA downstream 51262 5166427 ~ 5195429 (+) True CI01000071_05167170_05195192
TU319744 other upstream 2057242 3056084 ~ 3056531 (+) True G282080
TU319630 other upstream 2285169 2804644 ~ 2804806 (+) True G281974
TU318234 other upstream 3736103 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 4191677 905217 ~ 922096 (+) True G280443
TU318001 other upstream 4310456 799775 ~ 799876 (+) True G280464

Expression Profile