CI01000071_05167170_05195192 (FBXW8)


Basic Information

Item Value
gene id CI01000071_05167170_05195192
gene name FBXW8
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 5166427 ~ 5195429 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000071_05167170_05195192.mRNA
TTATAAAAGGGATTTAATTTACCCAATTTCATGAAATCCTATTAGCTGCAGAAACAACAAAACAAAATATGAACCATATAGATATACATAATGAACCATAGTCCAGATTAATTCTTTCAGTATATTTGTCAATAGTTATACTAAAATTTGTAAACGGAAATAGGCCTACATAATATTTTGTCAATATAAATTACACAGTTATGTATATCTGATGATGCTGACACATATTTAGTGATAAACACACATTTAGTAAGAGATGCTGAACACATCCAAAACAATCTGATGCCTTTATTGTTTCCATTTTGAAGCCTTTCTCTCAGACCTCAGTAATCAGTGATGTAACATATTTTTGCTTCAGACAAACATGTAGAATAGAGCAGACGTCTAGCCATTTTGTCTCGAACATTTATACATTTAATGTTTGTCTTATACACATGTAGTTATTCGTAATATAGCGCGTGCAGGATTTTTTTGCAGCTGATGATGCTCGAAATGCTGTCTATGTAGACAGCTCATTAGTCTCTGAGACACAACCATTGTCTTTTGTTGTAAATAATTGTTCTTTTGGTTGGGTGAGGAATATGCGCCATGCGGAACACTTTACGTGAACATGATGTTCCAGCCGAGGCCATTTCGCGGTCGGATCACTGTTTGTTTTGATGGCAACAGCGGTATTCCACAAGACTTGCGTTTGAATATGAAATTTATAAATATGAATGAAAAAACAACGTGATTAAAAGGGGATGGACGAGGATGAGCTTTTGGCCTTTCGAGAGCGCTGGAAACAGGAGTTAAAGAAAAACCCCAAGACATCCGGTAAAGACAAAGAGGGATATTTTGGGCATCTCAGTAAAGACAGTTCATCTGTTCACCAAAGCACTAGCTTTTGGGAGAAGCAGAGCAATGCGTCCCAGCAAACTCAGCCCACAGCAAAAGACCTGCCGGAGTACGTGTCGATCGCCGAGGGTTTGTTGGACGGCAGAAGCAGTCCACTACTGGACAGAATCGAGCAAGAGAGAACGCGCAGGAAGCGCGCTCCCGACAGCGATGCGCTCAACACAGACGCGCCCCCCAAAAAAGAAAACAAGTGCCAGAAACTGCTTGAGCAGTTCCTTCAGGACCTGAATGAGGTGAATGACATCCCATTCTTTGATGTGGAGTTGCCCTATGAGCTAGCGCTAAAGATTTTCCACTTCCTGGGCAGAACGGATCTAGGACGATGTGCTCAGGTGAGTAAATCCTGGAAGGTGCTGGCTGAGGATGAGGTCCTGTGGCATAGATTGTGTCTGGAGGAAGGTTATAACAATGGGGCAAGTATCTCTGACTCCCCCTGCTGGAAGAGCACGCTCAGAGACTGTCGCAACACAGAGAATGTGGTCAAGTCAAACTGGAAGAATCGTGTTGGATCCATTCGTCACCTGCAGTACGAGTTAGGAAAGGTGTTGTGTGATGTCAGTTCCTGTGCTGGTCTTGTTATCGCTGGCTACAGCTCTGGGGATGTCCGTCTGTGGGACACTCTTCACTGGGACAAATCATACCTGCACACCACACATTCCATCAGAGATGAAACCCCTGCACCTTACGTTAGTCATGTACGTGTCAATAAGACTGTAGCCACAGCTGCTTATGAGAATGGGTGTGTAGATGTGTGGAGCACTGAAACCTGTCTTGAGCCCATTCACCAGTACCAGCACCTCCGTAGGGTTCATGCACTGGATCTAAGTCCTGACAGTCCGGCTTTGGCCTCTGCATCAGGACCAGATGTGCGGGTGGACGCACCAGATGAGAAGGGCTACTGGAGATCACAATGTCTCGTTCAGTTGCCAATGCCTGTAGATGGGGTATTGGTGGTGCCAGGGAGACGGGATTTCCCTTTGGTCACAGTATGGGCAGGTGAGAGTGTTTACCTGCTGGATTCCAAATGGAAGGAAGAACAGGAGCCAAGAATTCTTCACTATGTGTACGGCCATCCAGTGACCTGTGTGGACGTGTCACCCTGCAGAGCTGCACTGGGGATCAAGAGCTGCGGATGGGGCATGAATGACGGGGGCAACAAGATTCAGGTGTACAGCCTGGAGACCAGCCAGTGTGAGCTGACCGTGGGGAACTCGGCGGGAGACTTCACCTGCGTCAACCTGAGAGACAGCCCTCCTCACCTGCTGCCTCAGTGCTGCGGAGAGAGAGAAATCTCTGTTTGTGTTGTTCTGCCTGATTGGATCTGCCTGGACAGACATCTGTACAGGAAGTGTATACGGATAGGAGCCATAAGTGATGGAGTGAGAGTGTTTGACTTGCGTACTGGCTCCTCAGTCGTCTCTTTATATGCCCATCACATGGGCGTGACCACCGTCCAGGCAGATGATTGGAAGGTTGTGAGCGGAGGTGGTGAGGGATTGGTCAGTGTGTGGGAGATGAGGATAGGAGCCAAACTCTGGGAAATGCATAACAGGCACCCGGTTCGCCACATACGGTTCAACAGCAGCACTCTGGTGACGGCCAACATCCCTGATGAGAAGAACCCTCGCGGGGCTTGTATCACAGACGATGACCTCACCGCTCACCGCAGATACAGAGGGCTGATCTGTCACTATGACTTCTCAATGGACTCATCTGCACAGGATCACATCCTGCCCATCTGTAGGTCCAACTACACAGAGTCCTCTGGCTACAGCTATAACATTGGCTTGGCGATGCCTTATGACATACTGAAGGGCCCTTAGATTGGCATCTGATACACTGTGCTTTTGGGGCAAGTTGGACTGGAAAGATTGAATTTGCTCTTTTAAGATGATCTGGGGTCATATTTCTTAAAACTAATTCTTTATTTAACCATAATTTGTGTAAATTCAAAACTTTGGATGACACATTAAGATGTGTTTGAGGACTAGAATTACTAGATCTTTGTTTTTATAAATTGTATCATGTTCTGTCCTTGCACATTTTAGTATATAATACTA

Function

symbol description
fbxw8 Predicted to be part of preribosome, large subunit precursor. Orthologous to human FBXW8 (F-box and WD repeat domain containing 8).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K10264 FBXW8; F-box and WD-40 domain protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000071_05167170_05195192.mRNA True 2957 mRNA 0.46 12 5166427 5195429

Neighbor

gene id symbol gene type direction distance location
CI01000071_05142025_05161947 RNFT2 coding upstream 4133 5142025 ~ 5162294 (+)
CI01000071_05102723_05110135 GATSL3 coding upstream 56207 5102723 ~ 5110220 (+)
CI01000071_05082669_05087793 NIPSNAP1 coding upstream 78610 5082300 ~ 5087817 (+)
CI01000071_05081168_05081463 NA coding upstream 84274 5081168 ~ 5082153 (+)
CI01000071_05002535_05056745 NOS1 coding upstream 109019 5002189 ~ 5057408 (+)
G283570 NA non-coding upstream 51262 5113597 ~ 5115165 (+)
G283580 NA non-coding upstream 100420 5065791 ~ 5066007 (+)
G283557 NA non-coding upstream 101514 5064632 ~ 5064913 (+)
G283457 NA non-coding upstream 176723 4982595 ~ 4989704 (+)
G283422 NA non-coding upstream 196238 4969068 ~ 4970189 (+)
G282080 NA other upstream 2109896 3056084 ~ 3056531 (+)
CI01000071_02815324_02834097 NA other upstream 2337823 2815127 ~ 2835525 (+)
CI01000071_01374449_01376813 NA other upstream 3788757 1373996 ~ 1377670 (+)
G280443 NA other upstream 4244331 905217 ~ 922096 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 other upstream 4363110 791346 ~ 803317 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030873 fbxw8 coding NC_007116.7 CM002889.2 11864429 ~ 11905920 (-)