G283577


Basic Information

Item Value
gene id G283577
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 5144762 ~ 5196867 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU321382
TTTTGACAACACTAGTGTTTACAAAACCAATGACCACATGATCCATTGAACCAAACTGAATCAACACTGAACTGATTTCAGCTGAATAATGACTGTTGACTATTGTCTTTTTTGAGCTGTTTTACAGCAGAATGGAATTCTTTTTGCATTATTGAATTGGTATTTTACTGTTTATCACTGTAAAGCTGCTTTGAAACAATCTGTATTGTATAAAGCGCTGTGGAAATAAAGGTGACTTGATTTGACATGATCAATTACAGTGTAATGATACACTACCGTTCAAAAGTTTGGGGTCGGTAAGACTTTTTAATGTTTTTGAAAGAAGTCTCCTATTATTAGAATTTAAAATAACTGTTTTCTCTTTTAATATATTTTAAAATGTAATTTATTCCTGTGATGCAAAGCTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTGCCACTCAAGAAACTTTTTTAATTATTATCAATGTTGAAAACAGATGTGCTGCTTAATGTTCTTGTTGAACAGTAGTGTACATTGTAGTCGACACAAACCACATTTATCCATTGCAAATGAACCCATATTTAATCTGGTTTCTTTCACCTTGTGTAGTTTTGTTTTTTGAGTATGTCATGTTGTCATTTTTCTAATTCGGCTAGTTTCAACAAAGTAAAAGATGAATTTGCACCAAAATACCACTTTTACTGAATGCACAACCTCTGTCTAAATATAGTATGGGAAGCATTTTATAACCTTGATTATAGATTAATGATTTCAGACAGAATTCATCTACAAAATGCACAGTAGGAATACATACAACTTTTAAAACTATGATTATTTTATTCTCTTCAATTTTAGTGACAATTGTGAGGATTTCAAATGACAATAATGTACAAAAATATTACACTAATATCCTACAGTAAATTCTGCTGCTGTAAAAACTTTACACACCCTGTAATATTTATTAATATATAACCGTGATGGAAGGAAGCCAGATGGATTACATATTAAGGGCAACAAAACAATGGCTCCCTGTTGTTTTTGATGTGAACGATAAGATTTGTGGATTCATTAACTTAGGGTGTGGAGTGTTTCAGCACTTTGTTAAGGAAAACAGAGATTGTTGACTTTGTAAAGACTTCCTCCATTACAAAAGCATTTTGCTCAGAAAGGAAATCAGTTCCGCGGTCTCAACAATCCTAATAAAATCACAGTATACATTGTATCTGAAAGTATGAATCAAAATGCTTGAATGCATGTCAACTGTTGTAGAGTTGAGAAACTACAAAAATAGCCGGGTCTCATGTGGTTCTTCCATATATCTTCCAAATATATATATATAAATACTGTATGTTCAGTTTTCCTCAGAGGTCTGGACTCTAAGGACCTGCTTTCACCTGGTATTAATCAACCAAAAAGCAATACCAGGTGGAAACAGGGCCTGAAATGTATCCACCAGAGCATGTCGCGGTCACTTCCACCATATCTCGAGCATTGAAGATATTTCAGAGGAAGAAACCGAAGTAAACTCAATACTAAGGGTTGAATACGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU321382 True 1572 lncRNA 0.33 2 5144762 5196867

Neighbor

gene id symbol gene type direction distance location
CI01000071_05102723_05110135 GATSL3 coding upstream 34542 5102723 ~ 5110220 (+)
CI01000071_05082669_05087793 NIPSNAP1 coding upstream 56945 5082300 ~ 5087817 (+)
CI01000071_05081168_05081463 NA coding upstream 62609 5081168 ~ 5082153 (+)
CI01000071_05002535_05056745 NOS1 coding upstream 87354 5002189 ~ 5057408 (+)
CI01000071_04982029_04982493 NA coding upstream 162222 4981356 ~ 4982540 (+)
G283570 NA non-coding upstream 29597 5113597 ~ 5115165 (+)
G283580 NA non-coding upstream 78755 5065791 ~ 5066007 (+)
G283557 NA non-coding upstream 79849 5064632 ~ 5064913 (+)
G283457 NA non-coding upstream 155058 4982595 ~ 4989704 (+)
G283422 NA non-coding upstream 174573 4969068 ~ 4970189 (+)
G282080 NA other upstream 2088231 3056084 ~ 3056531 (+)
CI01000071_02815324_02834097 NA other upstream 2316158 2815127 ~ 2835525 (+)
CI01000071_01374449_01376813 NA other upstream 3767092 1373996 ~ 1377670 (+)
G280443 NA other upstream 4222666 905217 ~ 922096 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 other upstream 4341445 791346 ~ 803317 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G819695 NA non-coding NC_048573.1 CM023227.2 54414381 ~ 54414622 (+)