G819695


Basic Information

Item Value
gene id G819695
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 54414381 ~ 54414622 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU932138
GTAGGAACCAGAATGGAAATAAGTTGAAGATTTTATTGTGCAATGCTGGTCACGTTTAAAAATCTttgtgtatatacactaccgttcaaaagtttggggtcacttagaaatgtccatgtttttgaaagaaaagcaaaaaaattgtccattaaaataacatcaaatcgatcagaaatacagtgtagacatggttaatgttgtaaatgactattgtagctggaaacgtcagatttctttaatgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU932138 True 242 lncRNA 0.32 1 54414381 54414622

Neighbor

gene id symbol gene type direction distance location
LOC110532395 LOC106571990 coding upstream 108208 54295022 ~ 54306173 (+)
LOC110532396 LOC106571991 coding upstream 166466 54245323 ~ 54249584 (+)
LOC110532392 dffb coding upstream 174875 54234796 ~ 54239506 (+)
LOC118966073 NA coding upstream 180934 54231749 ~ 54233447 (+)
LOC110532391 LOC106571996 coding upstream 740883 53596083 ~ 53676213 (+)
twist3 LOC106572367 coding downstream 512106 54926728 ~ 54934570 (+)
LOC110532404 LOC106572363 coding downstream 777731 55192353 ~ 55207365 (+)
LOC110532406 LOC106572360 coding downstream 802984 55217606 ~ 55224372 (+)
LOC110532408 ctbl1 coding downstream 913490 55328112 ~ 55372587 (+)
LOC110532409 LOC106572359 coding downstream 960553 55375175 ~ 55410299 (+)
G819693 NA non-coding upstream 1329 54412829 ~ 54413052 (+)
G819672 NA non-coding upstream 19810 54394368 ~ 54394571 (+)
G819661 NA non-coding upstream 29735 54384422 ~ 54384646 (+)
G819488 NA non-coding upstream 42536 54371543 ~ 54371845 (+)
G819431 NA non-coding upstream 137349 54276832 ~ 54277032 (+)
G819696 NA non-coding downstream 70 54414692 ~ 54415076 (+)
G819701 NA non-coding downstream 4416 54419038 ~ 54419660 (+)
G819702 NA non-coding downstream 5185 54419807 ~ 54420159 (+)
G819707 NA non-coding downstream 8334 54422956 ~ 54423242 (+)
G819712 NA non-coding downstream 13459 54428081 ~ 54428323 (+)
LOC110532368 LOC106572016 other upstream 1686861 52692676 ~ 52734929 (+)
LOC110532349 LOC106591969 other upstream 2088741 52323001 ~ 52325924 (+)
G815767 casz1 other upstream 3067887 51345372 ~ 51346494 (+)
G815610 NA other upstream 3335439 51078447 ~ 51078942 (+)
G815428 NA other upstream 3614000 50796214 ~ 50800381 (+)
G819897 NA other downstream 312249 54726871 ~ 54727376 (+)
G820665 NA other downstream 818636 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 1116415 55531033 ~ 55647541 (+)
G820944 NA other downstream 1283018 55697640 ~ 55697978 (+)
G821363 uhrf1bp1 other downstream 1559420 55974042 ~ 55975316 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G283577 NA non-coding CI01000071 null 5144762 ~ 5196867 (+)
mexican tetra (Astyanax mexicanus) G236117 LOC108414046,LOC108413944 non-coding NW_019170925.1 APWO02000523.1 178554 ~ 179147 (-)