LOC118966073


Basic Information

Item Value
gene id LOC118966073
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 54231749 ~ 54233447 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053294.1
ccgcagagagtcagggcacccgtttaacgtcccatccgaaagatagcaccctacacagggcactgGCCTGGGGCTTTGGGatattagaccagaggaaagtgcCTCCTATAGgctctccaacaccacttccagaagcatctggtctcccatccagggactgaccaggaccaaccctgcttagcttcagaagcaagccagcagtgggatgcagggtggtatgttgCTGGCTAATTTTGCATCAAAACAATTTTGGCCAATAGCTATTTAGCAACTGAGCCCATTTAACAGCTAATTGAGGGTCACCTCTCCCTTGAACAAATTCCTTATAACTAATCTAAAGACTGCTGACCAATGGAAGCCTTCTTAAGAATTGACTTCCATTTCTTTGGACACTCTAGCCCAGTCCAAAAACTATTAGCCTAGCCCGTGCCCCTGTAGATCTCTATTTTCGTGTCAATGCACATTCGTTGGGAATTTTAACCTGTTAAAGGGGAATGGACACACTTTAGGAAGTAAATCTAAGCAAAGAGATGTATTTTATCCACTTATACTAAAAACATGTGCATTTAACATAAAAACATATCTATATTTAGTATTTTGATCGCCGACGAGGTTTATTTGAGCTACGGTCAGCGCCATTTTAAATTGCCATAGTAACGACTGATGCCAGTGCTCACTGGCAGGCATCAGCAAATTGTCTGTGGTATTGAGTTTTTGTGCTGAGAGTGAATGAAGAGAGTGAGGTTAGGGGCGGACAACGAAGATGGCAACAGCAAGTTGTAATTCAAATATGAACTGTATAGCGCCAGGCTGTATGAATTGGCCCCCAAAAATCCCTCTGTAAACTACCATCGGCTTCCCATGGACCTACAACTTTAGAAGAAGTGGCTCCATGGCCTGAAAAGGAAGGACATGCCAGCTTGACCTAGCAGGATCTGCAGACAGCACTTTGCGGAGGCAGACTTCGCAATGAAGGGCACTTTCGATGAGGAAACTGGGAGTTTCCGAATGGAAAGGAGTCATAGGCCTACGTTGAAGCCCTCTGCTTGCGCCTCCATTTGAAATTGAGGGTTATGGTGTAGGGGTTACCAACCGACCATCATGAACATCACTGATTTTTGGAGTCAAGCAAAAGCAACTGAATGGAGGAGGCGACGATGACATCTTCATCCCTGAAAATGTTTTCATCCTGGAGGAGACTGTGCAGAAGGCAGAGG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053294.1 True 1217 mRNA 0.46 2 54231749 54233447

Neighbor

gene id symbol gene type direction distance location
LOC110532391 LOC106571996 coding upstream 558251 53596083 ~ 53676213 (+)
LOC110532390 gbrd coding upstream 806056 53404905 ~ 53425693 (+)
LOC110532385 LOC106572000 coding upstream 1016987 53202981 ~ 53214762 (+)
LOC110532383 LOC106572002 coding upstream 1077621 53128438 ~ 53154128 (+)
LOC110532379 LOC106572005 coding upstream 1109885 53043077 ~ 53121864 (+)
LOC110532392 dffb coding downstream 1349 54234796 ~ 54239506 (+)
LOC110532396 LOC106571991 coding downstream 11876 54245323 ~ 54249584 (+)
LOC110532395 LOC106571990 coding downstream 61575 54295022 ~ 54306173 (+)
twist3 LOC106572367 coding downstream 693281 54926728 ~ 54934570 (+)
LOC110532404 LOC106572363 coding downstream 958906 55192353 ~ 55207365 (+)
G819407 NA non-coding upstream 231 54231284 ~ 54231518 (+)
G819403 NA non-coding upstream 3740 54227571 ~ 54228009 (+)
G819402 NA non-coding upstream 4504 54226939 ~ 54227245 (+)
G819401 NA non-coding upstream 6350 54225065 ~ 54225399 (+)
G819387 NA non-coding upstream 23235 54208311 ~ 54208514 (+)
G819373 LOC106571994 non-coding downstream 8415 54241862 ~ 54243615 (+)
G819412 NA non-coding downstream 17257 54250704 ~ 54254479 (+)
G819416 NA non-coding downstream 22317 54255764 ~ 54256999 (+)
G819417 NA non-coding downstream 23665 54257112 ~ 54257452 (+)
LOC110532368 LOC106572016 other upstream 1504229 52692676 ~ 52734929 (+)
LOC110532349 LOC106591969 other upstream 1906109 52323001 ~ 52325924 (+)
G815767 casz1 other upstream 2885255 51345372 ~ 51346494 (+)
G815610 NA other upstream 3152807 51078447 ~ 51078942 (+)
G815428 NA other upstream 3431368 50796214 ~ 50800381 (+)
G819897 NA other downstream 493424 54726871 ~ 54727376 (+)
G820665 NA other downstream 999811 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 1297590 55531033 ~ 55647541 (+)
G820944 NA other downstream 1464193 55697640 ~ 55697978 (+)
G821363 uhrf1bp1 other downstream 1740595 55974042 ~ 55975316 (+)

Expression


Co-expression Network