G819416


Basic Information

Item Value
gene id G819416
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 54255764 ~ 54256999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU931854
acacatttttatttacaatgacggcctaccaaaagccaaaaggcctcctgcggggatgggggattaaaaataaaaatgtaggacaaaacatacatcacaacgagagagacaccacaacactacataaagagagacctaagacaacacagcatggcagcaacacatgacaacacagcatggtagcaacacaacatgacaacaatacagtagcaacacaacatggcagcagcacaaagcATGATACAAACATTATTTGGCACAGACAACAGCTCCAAAGTCGCTGGAAGACATTTTCAATCTTTGCCTGACTGACGCATGAACAGGTTTCAGATGTTATATACGGAAGAGTTACTCTGTCAAATTTCCCCCAAAAGGAGGCTTAGTGTCGACATGCATTGACAATGCAGCTCAAATAGAGCATTTACATTCTATTCTAATATTTCtatttacagtggcaagaaaaattaTATGAaccctggatttctgcataattCGGTCATGAAATTTGATTcctctaggtcacaacaatagacaaacaaagtctgcttaaactaataacacaagaAAACGTATAAttttatgtctttattgaacacaccgtgtaaacattcacagtgccgGGTGGGAAaaatgtgaacccttggatttaataactggttgaccctcctttggtagcaataacctcaacaaaatgttttctgtagttgcggatcagacctgcacaacagtcaggaggaattttggaccattcctctttacaaaactgtttcagttcagcaatagtcttgggatgtctggtgtgaactgttcTCTTGAGGTCataccacagcatctcaatcgggttgaggtcaggacttctgttgaagccattctgttgttggtttacttctgtgttttgggtcgttgtcctgttgcatcacacaacttctgttgagcttaaattggcggacagatagtcttacattctcctgcaaaatgtcttgataaacttgggaattcatttttccgtcgatgatagcaagctgtccaggccctgagagagcaaagcagccccaaaccatgatgctccctccaccatactttacagttgggattaagttttgatgttggtgtgctgtgccttcttttctccacacatagtgttgtgtgttccttccaaacaactaaactttagtttcatctgtccacaaaatattttgccagtagtgctgtggaacatccaggtgcacttttgca

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU931854 True 1236 lncRNA 0.41 1 54255764 54256999

Neighbor

gene id symbol gene type direction distance location
LOC110532396 LOC106571991 coding upstream 7849 54245323 ~ 54249584 (+)
LOC110532392 dffb coding upstream 16258 54234796 ~ 54239506 (+)
LOC118966073 NA coding upstream 22317 54231749 ~ 54233447 (+)
LOC110532391 LOC106571996 coding upstream 582266 53596083 ~ 53676213 (+)
LOC110532390 gbrd coding upstream 830071 53404905 ~ 53425693 (+)
LOC110532395 LOC106571990 coding downstream 38023 54295022 ~ 54306173 (+)
twist3 LOC106572367 coding downstream 669729 54926728 ~ 54934570 (+)
LOC110532404 LOC106572363 coding downstream 935354 55192353 ~ 55207365 (+)
LOC110532406 LOC106572360 coding downstream 960607 55217606 ~ 55224372 (+)
LOC110532408 ctbl1 coding downstream 1071113 55328112 ~ 55372587 (+)
G819412 NA non-coding upstream 1285 54250704 ~ 54254479 (+)
G819373 LOC106571994 non-coding upstream 12149 54241862 ~ 54243615 (+)
G819407 NA non-coding upstream 24246 54231284 ~ 54231518 (+)
G819403 NA non-coding upstream 27755 54227571 ~ 54228009 (+)
G819417 NA non-coding downstream 113 54257112 ~ 54257452 (+)
G819418 NA non-coding downstream 518 54257517 ~ 54257963 (+)
G819421 NA non-coding downstream 6379 54263378 ~ 54263601 (+)
G819422 NA non-coding downstream 7162 54264161 ~ 54264423 (+)
G819424 NA non-coding downstream 11202 54268201 ~ 54268422 (+)
LOC110532368 LOC106572016 other upstream 1528244 52692676 ~ 52734929 (+)
LOC110532349 LOC106591969 other upstream 1930124 52323001 ~ 52325924 (+)
G815767 casz1 other upstream 2909270 51345372 ~ 51346494 (+)
G815610 NA other upstream 3176822 51078447 ~ 51078942 (+)
G815428 NA other upstream 3455383 50796214 ~ 50800381 (+)
G819897 NA other downstream 469872 54726871 ~ 54727376 (+)
G820665 NA other downstream 976259 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 1274038 55531033 ~ 55647541 (+)
G820944 NA other downstream 1440641 55697640 ~ 55697978 (+)
G821363 uhrf1bp1 other downstream 1717043 55974042 ~ 55975316 (+)

Expression


Co-expression Network