CI01000072_01238939_01264489


Basic Information

Item Value
gene id CI01000072_01238939_01264489
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1238429 ~ 1265465 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_01238939_01264489.mRNA
ATATATATATAGTTGCCTTAAGAATGTGGAGACCATATTTTAAAATGTTATTGCATTAGATTAGATAAGAAAATATTTGTCTGAACGAAAATGTTCGATTTTTATTAATAAAACAACATTAAGTTAATAGTGCTCAGAAGATGTTTTGATATTGTTATCTACTGTGTTGAAGTATTCATTTTTAAGTCTGGTTGCAGTGTCTAAATGCTTTTGGTGCAGCTGTATAATGTTAACACTTTTGATCTCTTTAATGCCTAAATTAAATTCTGTGGTAACTCATATGGTGAATTATCTCTAGACGTTGTCTGGCAGGACTTGGAAGGTGATACGGTCTCAGTAGGGTCCAGACAAAGGCCCCAGGAATGAAAAAGCTGATTGCTGTTGATGCTGCTGTCAACTGCGATGTGCGTGTTAATAGTGCCAACTTTTGACCTGCTGGCTTTGTGGGAGAGATGAAAAGCTCATTAAATCCTGCATGGTGATGTGGGTTTCAGCAGTCAAAGGGAGAGAATGAAAACCTCGGAGCTACACCGAGCCTCGGTAATGGAAGTGTGCTTTGATTTTAAGCCATATGAATGCAGCACGACCCTGCGCAAGCACAGCGCTTCTCACTGGCGCATGCAGAACATCGCCCAGGAATCTGTCGACAGCTCGGATGATGAGTTTTTTGATGCCCGAGAGGTGCTGGAGGGGAAGACGGCCATGCTTTTGGGGATGAGTCAGTGGAACTCTAATGATCTGGTTGAACAGATAGAAACCCTGGGCCACATTGACCAGACGCAGGATGAGCTAGAGCTATCCTTTGTATCAAGTCCATTGATGTCAAATCTAGAAAAATCAGTGATACTGCTGAGGATCTGGGATACCTTCCCTAAGGGCTACCTGATTGACGATTTAATTGACGACCTGATTATTCAAGGAATCACATGCGTGACTGATAGCTGGAGCCACACCAGACAGTTTAGGGATTTGGAGACTTTTGTGACACTCTCTCTTCCATCTATAAACTTGCGTCTTGGGAACCAGACATGGCCTCTCCATGCCTCACCACAGCCAGACACTCGAACATGCCTCATCTGTATTCTCTCCCACGTGAGCCTCTGCCAAGTCGTTTTTAAACATATGCCTCTTGTAGGCACAATCTCCCTCACACGCTAATTCCCATTTAATTACTTTTTCTTTCCTTTTCTTTTGTCCATTTAACCACAGAATGCCCCAAGCAGGGGAAACTGAAGACACACAAAGCTAGGAACAATAAGATGGCTCCGCAGAGAGAAAGAATGAGAGAAAAGGGAGGAAAAGAACCATGATAAGGTGATGACGGAGCGTACTGGCACAGGAGGAGGGTTGAGCTCACGATTGCTGTATTGACTCGCATTGTGTCTGCCAGCACTGAAGGACACTGATTCCAGAATGTGACAGATTCTGCTGTTTAGAAAATTATGTGTTCGTGGTCCAACATTAACACTTGCCAAGCGCTAAGTCCAAGTAAAAATTGTCTTTGGCAAGTACAACATTACATGGTTTAAAGTGAATAGAAAAATGATGTTATGTTAGTCATGCCTGCAATTCAAATCACCGTCTACTTAAGAAAATATGTCGCGGCTCAAGCGCCTTTGTCTTCAGTGCAAAATTTCCCATCATAAGTTTATATGTTTTGAATTTTACATTCAAAACAGTGACATTTTTTTAAAAAAGTTGGGTTGCTTGCATCCCTACTGTCGTTCAGCATTCCTCTCGTAAAACAGTTAAATGTTTAGCTGCTACTTTCCATGCACTCTCTTTCAGAGATAAACCTAAAGCGTTGCTCTGGAATACTTGTCTTCTGTAAGACCAGCCTTCTTTGATTTGATTGGCCATCTTACTCATTTTGACATTGACGAGCGCTGCTGTTAGTCTATTGAGACAGAGCAACTTAAAACTTTTTGTCCTCCAAATAACAAACAAAGCTGCGCGTAACGAAGTGCAGCAGAGCAGCATCAAGAATATCAAATATTGAGGGACAATTTGGCCATTCTAATTTTGGGGGAAACTTTGGGGAGTCCCTCTAAATGTCTATGGTGGCTGTATATCTAACATATACTCTACATTTCATAAAAGATATGTATCATATCTTCTACATTTAAAATTTATA

Function

NR:

description
membrane-associated phosphatidylinositol transfer protein 3, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_01238939_01264489.mRNA True 2134 mRNA 0.41 7 1238429 1265465

Neighbor

gene id symbol gene type direction distance location
CI01000072_01183833_01210925 KIAA0753 coding upstream 26217 1183539 ~ 1212212 (+)
CI01000072_01163522_01163779 NA coding upstream 74470 1163008 ~ 1163959 (+)
CI01000072_01145519_01157117 NA coding upstream 80554 1145519 ~ 1157875 (+)
CI01000072_01119954_01120757 NA coding upstream 117585 1119303 ~ 1120844 (+)
CI01000072_00873737_00876816 NA coding upstream 361527 873737 ~ 876902 (+)
CI01000072_01272628_01318779 PITPNM3 coding downstream 7065 1272530 ~ 1319079 (+)
CI01000072_01334982_01348258 NA coding downstream 69517 1334982 ~ 1348258 (+)
CI01000072_01351729_01362820 NA coding downstream 85007 1350472 ~ 1363039 (+)
CI01000072_01391395_01404483 WDR81 coding downstream 124061 1389526 ~ 1406073 (+)
CI01000072_01406735_01412673 SERPINF2B coding downstream 141270 1406735 ~ 1413120 (+)
G284464 NA non-coding upstream 169271 1068520 ~ 1069158 (+)
G284338 NA non-coding upstream 382552 855530 ~ 855877 (+)
G284296 NA non-coding upstream 492457 745722 ~ 745972 (+)
G284121 NA non-coding upstream 570418 667773 ~ 668011 (+)
G284550 NA non-coding downstream 68011 1333476 ~ 1333715 (+)
G284559 NA non-coding downstream 116278 1381743 ~ 1442788 (+)
G284696 NA non-coding downstream 321686 1587151 ~ 1590509 (+)
G284694 NA non-coding downstream 391387 1656852 ~ 1696292 (+)
G284851 NA non-coding downstream 566203 1831668 ~ 1831971 (+)
CI01000072_00338411_00351144 NA other upstream 887141 337071 ~ 351288 (+)
G284742 NA other downstream 716065 1981530 ~ 1985140 (+)
G285428 NA other downstream 2704792 3970257 ~ 3976214 (+)
G286470 NA other downstream 2903639 4169104 ~ 4175651 (+)
CI01000072_04225105_04268007 SIK2B, SIK2 other downstream 2959373 4224789 ~ 4268148 (+)
CI01000072_04338747_04342064 SDHD other downstream 3073254 4338719 ~ 4343266 (+)

Expression


Co-expression Network