G284121


Basic Information

Item Value
gene id G284121
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 667773 ~ 668011 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU322037
TGTGAGTACAGTGGTTCTGCCTTAATATTATAAAGCGACGAGAATACTTTTTGTGTGCCAAAAAAACAAAATAACGACTTTTCAACAATATCTAGTGATGGCCAATTTCAAAACACTGCTTCGAATCTTTTGTTTTGAATCAGTGGTTAGGATTGCGTGTCAAACTGCCAAACTGCTGAAATCACGTGACTTTGGCGATCCGAACCACTGATTCGAAACAAAAGATCGAAACAAAGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU322037 True 239 lncRNA 0.38 1 667773 668011

Neighbor

gene id symbol gene type direction distance location
CI01000072_00629638_00638277 LHX1, LHX1A, LHX1.L coding upstream 28422 629638 ~ 639351 (+)
CI01000072_00603805_00621584 NA coding upstream 45940 602642 ~ 621833 (+)
CI01000072_00453946_00487772 NA coding upstream 179139 453741 ~ 488634 (+)
CI01000072_00441183_00448301 NA coding upstream 219301 440626 ~ 448472 (+)
CI01000072_00404877_00406183 DHRS13A.3, DHR13 coding upstream 260681 404877 ~ 407092 (+)
CI01000072_00760940_00797319 BRIP1 coding downstream 92929 760940 ~ 797319 (+)
CI01000072_00847890_00857227 NA coding downstream 179188 847199 ~ 857899 (+)
CI01000072_00873737_00876816 NA coding downstream 205726 873737 ~ 876902 (+)
CI01000072_01119954_01120757 NA coding downstream 451292 1119303 ~ 1120844 (+)
CI01000072_01145519_01157117 NA coding downstream 477508 1145519 ~ 1157875 (+)
G284117 NA non-coding upstream 4898 662593 ~ 662875 (+)
G284111 NA non-coding upstream 21714 645671 ~ 646059 (+)
G283927 NA non-coding upstream 25713 640429 ~ 642060 (+)
G283951 NA non-coding upstream 287615 379916 ~ 380158 (+)
G283925 NA non-coding upstream 367447 298283 ~ 300326 (+)
G284296 NA non-coding downstream 77711 745722 ~ 745972 (+)
G284338 NA non-coding downstream 187519 855530 ~ 855877 (+)
G284464 NA non-coding downstream 400509 1068520 ~ 1069158 (+)
G284550 NA non-coding downstream 665465 1333476 ~ 1333715 (+)
CI01000072_00338411_00351144 NA other upstream 316485 337071 ~ 351288 (+)
G284742 NA other downstream 1313519 1981530 ~ 1985140 (+)
G285428 NA other downstream 3302246 3970257 ~ 3976214 (+)
G286470 NA other downstream 3501093 4169104 ~ 4175651 (+)
CI01000072_04225105_04268007 SIK2B, SIK2 other downstream 3556827 4224789 ~ 4268148 (+)
CI01000072_04338747_04342064 SDHD other downstream 3670708 4338719 ~ 4343266 (+)

Expression


Co-expression Network