CI01000072_00760940_00797319 (BRIP1)


Basic Information

Item Value
gene id CI01000072_00760940_00797319
gene name BRIP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 760940 ~ 797319 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_00760940_00797319.mRNA
ACATTGTCCTCCTCTGGACACAGAGACACACAGAATGGCTGCGGCTCCAGTGGACTACACCATAGGAGGGGTGAAAATAAACTTCCCCTGCAAAGCTTATCCCTCTCAGCTGGCCATGATGAATTCAATCATTCGTGGACTTAACCATGGGCAGCACTGTCTGTTGGAGAGTCCTACTGGCAGTGGGAAGAGTCTTGCTTTGCTTTGTTCGGCCCTTGCATGGCAGAAAGCACAGTTTGGTAAGGAACAGCCGGATGCAGGCACCAGTTCGGCTGACTTTAAGAAACCAGAAGTGGTTACTCCATGTCAATGTGTGTGCCATAGCCGAAATGCACATCCCACTTTCAACAGCACAGCATCTAAACCACCTCTGGTGGATCTTGCTGGTGAAGGTACTTCTGCTGAAGCTTCAACCCCTCTGTCAAAAGGAGCAGTCCAAAGTGACCAGCCTATAAAGTCGACTTTGTCTTCGCGTCTCTCTGAGAAACTTCAAGCCTCTCTCTCCAATGGAGAACAAGATGATGATTTTAAGATTGACAGGAAGCGCATTCGTACACCAGGCACAGAGCAAAAGAGCAGCAAGCGAAGATGTCTTGAACGAGGAGTGATTTACATTGATGATGATGATGATGAAGAGGAGGAGAATCTGGAGAGACCGGTGCCTGGGACTCAGAGTTGGACCATGGAATTGAACAGTGGTGCCAGAGCTGACGGCTGTCAGTCGCAGCCACAGTGTCCTTCTCCCGTGTCTTGTTCTCGCTGTCCTTGCGCCAACCTCAAAGCAGGACAGAAACTGGTTGAAAAGTCCAAGGACAACGAGAAAGACAAAGAGGGAAGCGGGAGGAAAAAGATTCCAAAGATATTCTTCGGCACTCGTACTCATAAGCAGATCACACAGATTGCACGGGAGTTGAAACGGACACTTTACTCCACCATGCCCATGACAATACTGTCCAGCCGAGACCACACCTGTGTCCACCCCGAAGTGGTACCTCATGCCAATCGCAATGAGCGCTGCAAGGAGCTGCTGGAGGCCAAGAACGGTGTGTCATGCCGGTACTACCACAATGTGCATAAAATGCGTGATCAGAGCTCTTTACAGTGGGTTCACGGGCTACACCAGGCCTGGGACATTGAGGATCTGGTGCGTCTTGGTGGCAAGCTGCGATCCTGTGCTTACTACGCAGCTCGGGAACTCATGCAAGAGGCCTGCATTGTGTTCTGTCCTTACAACTACCTGCTGGACCCCCTCATTCGTGAGAGTATGGAAATCAATCTGAAGGAGCAGATTGTGGTGCTGGATGAGGCTCATAACATAGAGGACTGTGCCCGTGAGAGTGCCAGTTTCACCCTGAATCAAGCTCAGCTGTTGCTGGCACGTGATGAGATCGACGGAATGGTGACACACAACATTCGGCGCGATCAACACAGGCCACTGCTAGCCTTCTGCTGCAGCCTTGCCAACTGGGTGCAGGAAAGCTGCAATGGCTTGGAGGAGCGCGAATATGAGTCTTCTTGTAAGGTCTGGACAGGGACGGAGGTTCTTGGCATCTTCCATGGCCTTGGCATCACAGCAGACACCTTCTCTTTGCTACAGAAAAACCTGGCAGCAGTGCTAGAGAAGGAGGAGCGGATCGGGCTAGTGAACGGGAGAGAAGATACGGTGCAGGTTCCCACCATCAGCTCCAACACTCAGTCAATGCTCAAAAGCCTCTTTATGGTGCTGGAATTTCTTTTCAGGCAAAATTGCAGGTTTGCTGATGATTACCGTGTGGCTCTCCAGCAGAGCTACATGTGGACCACCCAGCAGGAGCCGCCCGACGCTCAGGGCTTTTTTGCACGACCCCAGCGTCGCCGACAGGGTACCCGCACCAAAACTCTGGTGCACACCCTGAGCTTTTGGTGCCTCAACCCTGCTGTGGCATTTTCAGATCTAAGTGATTCAGTGCGGAGTATTGTGCTGACTTCAGGCACCCTCTCTCCCATGGGCTCCTTTTCCTCTGAGCTGGGCATCAAATTCTCCATCCAGCTGGAGGCCAATCACGTTATCAGCAAGTCACAGGTCTGGGTCGGTACAGTTGGTGCAGGACCTCAGGGTCGTAAACTTTGTGCCACATTTCAGCATGCAGAGACATTTGCCTTCCAGGATGAAGTAGGGGCCCTGCTTTTGAAAGTGTGCCACACAGTGAGTCGAGGGGTTCTCTGCTTCCTGCCATCCTACAAGGGGCAGTATTTTATTATCCTGTTATGCTCAGGTCATCATCAGGTTACACTTCAGGCCAAGTACAAATTAATAACGTTGACCCTTAAGATGTTGGATAAACTGAGGGACCGCTGGATGAAAACAGGTCTGTGGGACAAGCTTGAGGAGCGAAAGACTGTGATCACTGAGCCACGTGGTGGTGGCAAGGGTGATTTTGATGAACTGCTGCAGACCTACTATGAGGCCATCAGAGGAACAGTAGCCAACAGTGAAAACAGAGATGGAGCGCTGCTGGTAGCTGTTTGCAGAGGGAAGGTGAGCGAGGGCTTAGACTTCACCGATGACAATGCCAGAGCAGTGGTTACTATTGGTATCCCATTCCCCAATATCAAAGACTTGCAGGTTGAACTGAAGATGAAATATAATGACAAGCATGCCAAGTCACGAGGACTTCTGCCTGGTGGGCGCTGGTATGAGATTCAAGCATATCGGGCACTAAACCAGGCACTCGGAAGGTGTATACGACATCGAAATGACTGGGGGGCACTTATACTGGTAGATGACCGGTTTAAGACGAACCCAAACAAATACATCACAGGCCTGTCAAAGTGGGTGCGTCAGCTAGTGAGGCACCATGACACCTTCACGGGCGCCATGCAGTCCCTGGAGTCCTTTTCTCAAGGCCAGCGGGGGGCAGTAGAGACCTTCGAAGAGACACAATCGCAGACTGTCCCTCAATACCCAAGCCCCTCCAGTGTTACCTCTCCCCCTCCTGAGATAATCACACCCCACAAGTCATTTGACCCTCAGCCTGCACCACTAAATCTACACACCGAGGTGCAAGCAGCCAGCTCTGAGAGCAAGACTTCTGAATCAGGTCACCAAAAGAATATACAGCATCCTTCTGAACCAATCACATTGCCAACCAGAGAACGTAATGTCCAAAGAATAACATGGCCTACAGGCCATCTCTTCACCTCCTCTCCAGTCAGTAGCCAATTTAAGACTTCTATTTTTCAATCCGAGCAGGATGTGAATTCAGTGAACAACAAGCAAGTTCAGCAGGAACTTATTCCTGTGCTTCCTGTGGCACCAAAGCACCAAATAAATGTTGCTCCTGACCTAAATGACAGCTCATTTGAACCTCAACATGAGCAGCTCTTTGTGATCCCTAACTCTACATTGAAGCAGAACACCAGTGGAATGGACCTTGATGACACCGAAGAGGATGAACAAAGTATCTTCTACAGCCCTGAGCTTTTTGAAGGAGATGGGGGGGAGAATGAAGAGACTACTGAGGTGGAAAAATCTCCTGCAGAAGTCAGCCATCCTCCTGCTAGCAGCACAGCCAGCATTCTTTTGGAGGATCTGTTTGGTTTAAAGCAGGAGAAGAGGACATTGTCTGAAGACGTTGTGAGCAGCACTGTCCCAGACAACACATTATTACAGGGTAGTACAGAGCAGATAGGTTTAAACTGTGGTACAGACTTTGAGAGTGTGCCTGCCTCACAAAATGGCACCAGCAATAGTCGGTCACGTAGACTCTCCAGATCTAGGCAGAAAAGGCCCAGCACATCAGCAGCATCAGGTCAAAGTTCAGACTTAAGGATCAGGGAGAGAGTGCCAGCTCAAAATCCACACAAAACTAGTTCAAGGCCTCCAACCTCACTAAAACCAGAGCTAAACCAGAAAATGAGAGGCCATATCCTGAATAGAAAAGAGTCAAAACACACACATAGAGGTAACCAGCAGAAACTAAGAGAAGCTGAGGATTTTGGACAGGATAACTGTAGCAATGTACAAACGGTAGTCCTCCACAACCAATACAGCCGTGCCAGAACAAATGCCGTTGTAGTGCCTCTACAGGGAGCCAAACGAAGAGATTCAGTCAGACACCCAACCCAGAGACCCTCAGGGCATCATGGGTCATCAGACGTCTCATCTGCAGAGAGGTTAGAGAGGGAGAGAAGAACTAGAGAAACTGGCACTTGTATTACAGTCGAACCTTTGCCTCCATCTTTAGCGGTACTGAATGACAGCTTAGAGACCCAAACAGGTATCAAAGTTCAGAGATCATATCTGAGGAAGAACAGACAGCCAAAGAGGCTTAAAATGGCACATGAGAGCAGACATTCTCAAACACAGAG

Function

symbol description
brip1 Predicted to enable DNA helicase activity. Predicted to be involved in double-strand break repair involved in meiotic recombination and nucleotide-excision repair. Predicted to act upstream of or within nucleobase-containing compound metabolic process. Predicted to be active in nucleus. Is expressed in central nervous system; lens; oral epithelium; and pectoral fin fold. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group J; breast cancer; colorectal cancer; and thrombocytopenia. Orthologous to human BRIP1 (BRCA1 interacting helicase 1).

NR:

description
Fanconi anemia J

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K15362 BRIP1, BACH1, FANCJ; fanconi anemia group J protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_00760940_00797319.mRNA True 4350 mRNA 0.50 22 760940 797319

Neighbor

gene id symbol gene type direction distance location
CI01000072_00629638_00638277 LHX1, LHX1A, LHX1.L coding upstream 121589 629638 ~ 639351 (+)
CI01000072_00603805_00621584 NA coding upstream 139107 602642 ~ 621833 (+)
CI01000072_00453946_00487772 NA coding upstream 272306 453741 ~ 488634 (+)
CI01000072_00441183_00448301 NA coding upstream 312468 440626 ~ 448472 (+)
CI01000072_00404877_00406183 DHRS13A.3, DHR13 coding upstream 353848 404877 ~ 407092 (+)
CI01000072_00847890_00857227 NA coding downstream 49880 847199 ~ 857899 (+)
CI01000072_00873737_00876816 NA coding downstream 76418 873737 ~ 876902 (+)
CI01000072_01119954_01120757 NA coding downstream 321984 1119303 ~ 1120844 (+)
CI01000072_01145519_01157117 NA coding downstream 348200 1145519 ~ 1157875 (+)
CI01000072_01163522_01163779 NA coding downstream 365689 1163008 ~ 1163959 (+)
G284296 NA non-coding upstream 14968 745722 ~ 745972 (+)
G284121 NA non-coding upstream 92929 667773 ~ 668011 (+)
G284117 NA non-coding upstream 98065 662593 ~ 662875 (+)
G284111 NA non-coding upstream 114881 645671 ~ 646059 (+)
G283927 NA non-coding upstream 118880 640429 ~ 642060 (+)
G284338 NA non-coding downstream 58211 855530 ~ 855877 (+)
G284464 NA non-coding downstream 271201 1068520 ~ 1069158 (+)
G284550 NA non-coding downstream 536157 1333476 ~ 1333715 (+)
G284559 NA non-coding downstream 584424 1381743 ~ 1442788 (+)
CI01000072_00338411_00351144 NA other upstream 409652 337071 ~ 351288 (+)
G284742 NA other downstream 1184211 1981530 ~ 1985140 (+)
G285428 NA other downstream 3172938 3970257 ~ 3976214 (+)
G286470 NA other downstream 3371785 4169104 ~ 4175651 (+)
CI01000072_04225105_04268007 SIK2B, SIK2 other downstream 3427519 4224789 ~ 4268148 (+)
CI01000072_04338747_04342064 SDHD other downstream 3541400 4338719 ~ 4343266 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005553 NA coding CM030142.1 CM030142.1 4604876 ~ 4615951 (+)