RNA id: CI01000072_00760940_00797319.mRNA


Basic Information

Item Value
RNA id CI01000072_00760940_00797319.mRNA
length 4350
RNA type mRNA
GC content 0.50
exon number 22
gene id CI01000072_00760940_00797319
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 760940 ~ 797319 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATTGTCCTCCTCTGGACACAGAGACACACAGAATGGCTGCGGCTCCAGTGGACTACACCATAGGAGGGGTGAAAATAAACTTCCCCTGCAAAGCTTATCCCTCTCAGCTGGCCATGATGAATTCAATCATTCGTGGACTTAACCATGGGCAGCACTGTCTGTTGGAGAGTCCTACTGGCAGTGGGAAGAGTCTTGCTTTGCTTTGTTCGGCCCTTGCATGGCAGAAAGCACAGTTTGGTAAGGAACAGCCGGATGCAGGCACCAGTTCGGCTGACTTTAAGAAACCAGAAGTGGTTACTCCATGTCAATGTGTGTGCCATAGCCGAAATGCACATCCCACTTTCAACAGCACAGCATCTAAACCACCTCTGGTGGATCTTGCTGGTGAAGGTACTTCTGCTGAAGCTTCAACCCCTCTGTCAAAAGGAGCAGTCCAAAGTGACCAGCCTATAAAGTCGACTTTGTCTTCGCGTCTCTCTGAGAAACTTCAAGCCTCTCTCTCCAATGGAGAACAAGATGATGATTTTAAGATTGACAGGAAGCGCATTCGTACACCAGGCACAGAGCAAAAGAGCAGCAAGCGAAGATGTCTTGAACGAGGAGTGATTTACATTGATGATGATGATGATGAAGAGGAGGAGAATCTGGAGAGACCGGTGCCTGGGACTCAGAGTTGGACCATGGAATTGAACAGTGGTGCCAGAGCTGACGGCTGTCAGTCGCAGCCACAGTGTCCTTCTCCCGTGTCTTGTTCTCGCTGTCCTTGCGCCAACCTCAAAGCAGGACAGAAACTGGTTGAAAAGTCCAAGGACAACGAGAAAGACAAAGAGGGAAGCGGGAGGAAAAAGATTCCAAAGATATTCTTCGGCACTCGTACTCATAAGCAGATCACACAGATTGCACGGGAGTTGAAACGGACACTTTACTCCACCATGCCCATGACAATACTGTCCAGCCGAGACCACACCTGTGTCCACCCCGAAGTGGTACCTCATGCCAATCGCAATGAGCGCTGCAAGGAGCTGCTGGAGGCCAAGAACGGTGTGTCATGCCGGTACTACCACAATGTGCATAAAATGCGTGATCAGAGCTCTTTACAGTGGGTTCACGGGCTACACCAGGCCTGGGACATTGAGGATCTGGTGCGTCTTGGTGGCAAGCTGCGATCCTGTGCTTACTACGCAGCTCGGGAACTCATGCAAGAGGCCTGCATTGTGTTCTGTCCTTACAACTACCTGCTGGACCCCCTCATTCGTGAGAGTATGGAAATCAATCTGAAGGAGCAGATTGTGGTGCTGGATGAGGCTCATAACATAGAGGACTGTGCCCGTGAGAGTGCCAGTTTCACCCTGAATCAAGCTCAGCTGTTGCTGGCACGTGATGAGATCGACGGAATGGTGACACACAACATTCGGCGCGATCAACACAGGCCACTGCTAGCCTTCTGCTGCAGCCTTGCCAACTGGGTGCAGGAAAGCTGCAATGGCTTGGAGGAGCGCGAATATGAGTCTTCTTGTAAGGTCTGGACAGGGACGGAGGTTCTTGGCATCTTCCATGGCCTTGGCATCACAGCAGACACCTTCTCTTTGCTACAGAAAAACCTGGCAGCAGTGCTAGAGAAGGAGGAGCGGATCGGGCTAGTGAACGGGAGAGAAGATACGGTGCAGGTTCCCACCATCAGCTCCAACACTCAGTCAATGCTCAAAAGCCTCTTTATGGTGCTGGAATTTCTTTTCAGGCAAAATTGCAGGTTTGCTGATGATTACCGTGTGGCTCTCCAGCAGAGCTACATGTGGACCACCCAGCAGGAGCCGCCCGACGCTCAGGGCTTTTTTGCACGACCCCAGCGTCGCCGACAGGGTACCCGCACCAAAACTCTGGTGCACACCCTGAGCTTTTGGTGCCTCAACCCTGCTGTGGCATTTTCAGATCTAAGTGATTCAGTGCGGAGTATTGTGCTGACTTCAGGCACCCTCTCTCCCATGGGCTCCTTTTCCTCTGAGCTGGGCATCAAATTCTCCATCCAGCTGGAGGCCAATCACGTTATCAGCAAGTCACAGGTCTGGGTCGGTACAGTTGGTGCAGGACCTCAGGGTCGTAAACTTTGTGCCACATTTCAGCATGCAGAGACATTTGCCTTCCAGGATGAAGTAGGGGCCCTGCTTTTGAAAGTGTGCCACACAGTGAGTCGAGGGGTTCTCTGCTTCCTGCCATCCTACAAGGGGCAGTATTTTATTATCCTGTTATGCTCAGGTCATCATCAGGTTACACTTCAGGCCAAGTACAAATTAATAACGTTGACCCTTAAGATGTTGGATAAACTGAGGGACCGCTGGATGAAAACAGGTCTGTGGGACAAGCTTGAGGAGCGAAAGACTGTGATCACTGAGCCACGTGGTGGTGGCAAGGGTGATTTTGATGAACTGCTGCAGACCTACTATGAGGCCATCAGAGGAACAGTAGCCAACAGTGAAAACAGAGATGGAGCGCTGCTGGTAGCTGTTTGCAGAGGGAAGGTGAGCGAGGGCTTAGACTTCACCGATGACAATGCCAGAGCAGTGGTTACTATTGGTATCCCATTCCCCAATATCAAAGACTTGCAGGTTGAACTGAAGATGAAATATAATGACAAGCATGCCAAGTCACGAGGACTTCTGCCTGGTGGGCGCTGGTATGAGATTCAAGCATATCGGGCACTAAACCAGGCACTCGGAAGGTGTATACGACATCGAAATGACTGGGGGGCACTTATACTGGTAGATGACCGGTTTAAGACGAACCCAAACAAATACATCACAGGCCTGTCAAAGTGGGTGCGTCAGCTAGTGAGGCACCATGACACCTTCACGGGCGCCATGCAGTCCCTGGAGTCCTTTTCTCAAGGCCAGCGGGGGGCAGTAGAGACCTTCGAAGAGACACAATCGCAGACTGTCCCTCAATACCCAAGCCCCTCCAGTGTTACCTCTCCCCCTCCTGAGATAATCACACCCCACAAGTCATTTGACCCTCAGCCTGCACCACTAAATCTACACACCGAGGTGCAAGCAGCCAGCTCTGAGAGCAAGACTTCTGAATCAGGTCACCAAAAGAATATACAGCATCCTTCTGAACCAATCACATTGCCAACCAGAGAACGTAATGTCCAAAGAATAACATGGCCTACAGGCCATCTCTTCACCTCCTCTCCAGTCAGTAGCCAATTTAAGACTTCTATTTTTCAATCCGAGCAGGATGTGAATTCAGTGAACAACAAGCAAGTTCAGCAGGAACTTATTCCTGTGCTTCCTGTGGCACCAAAGCACCAAATAAATGTTGCTCCTGACCTAAATGACAGCTCATTTGAACCTCAACATGAGCAGCTCTTTGTGATCCCTAACTCTACATTGAAGCAGAACACCAGTGGAATGGACCTTGATGACACCGAAGAGGATGAACAAAGTATCTTCTACAGCCCTGAGCTTTTTGAAGGAGATGGGGGGGAGAATGAAGAGACTACTGAGGTGGAAAAATCTCCTGCAGAAGTCAGCCATCCTCCTGCTAGCAGCACAGCCAGCATTCTTTTGGAGGATCTGTTTGGTTTAAAGCAGGAGAAGAGGACATTGTCTGAAGACGTTGTGAGCAGCACTGTCCCAGACAACACATTATTACAGGGTAGTACAGAGCAGATAGGTTTAAACTGTGGTACAGACTTTGAGAGTGTGCCTGCCTCACAAAATGGCACCAGCAATAGTCGGTCACGTAGACTCTCCAGATCTAGGCAGAAAAGGCCCAGCACATCAGCAGCATCAGGTCAAAGTTCAGACTTAAGGATCAGGGAGAGAGTGCCAGCTCAAAATCCACACAAAACTAGTTCAAGGCCTCCAACCTCACTAAAACCAGAGCTAAACCAGAAAATGAGAGGCCATATCCTGAATAGAAAAGAGTCAAAACACACACATAGAGGTAACCAGCAGAAACTAAGAGAAGCTGAGGATTTTGGACAGGATAACTGTAGCAATGTACAAACGGTAGTCCTCCACAACCAATACAGCCGTGCCAGAACAAATGCCGTTGTAGTGCCTCTACAGGGAGCCAAACGAAGAGATTCAGTCAGACACCCAACCCAGAGACCCTCAGGGCATCATGGGTCATCAGACGTCTCATCTGCAGAGAGGTTAGAGAGGGAGAGAAGAACTAGAGAAACTGGCACTTGTATTACAGTCGAACCTTTGCCTCCATCTTTAGCGGTACTGAATGACAGCTTAGAGACCCAAACAGGTATCAAAGTTCAGAGATCATATCTGAGGAAGAACAGACAGCCAAAGAGGCTTAAAATGGCACATGAGAGCAGACATTCTCAAACACAGAG

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K15362 BRIP1, BACH1, FANCJ; fanconi anemia group J protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322231 lncRNA upstream 14968 745722 ~ 745972 (+) True G284296
TU322037 lncRNA upstream 92929 667773 ~ 668011 (+) True G284121
TU322033 lncRNA upstream 98065 662593 ~ 662875 (+) True G284117
TU322027 lncRNA upstream 114881 645671 ~ 646059 (+) True G284111
TU321806 lncRNA upstream 118880 640429 ~ 642060 (+) True G283927
TU322279 lncRNA downstream 58211 855530 ~ 855877 (+) True G284338
TU322243 lncRNA downstream 69591 866910 ~ 867085 (+) False G284306
TU322244 lncRNA downstream 69591 866910 ~ 867085 (+) True G284306
TU322426 lncRNA downstream 271201 1068520 ~ 1069158 (+) True G284464
TU322515 lncRNA downstream 536157 1333476 ~ 1333715 (+) True G284550
CI01000072_00629638_00638277.mRNA mRNA upstream 121589 629638 ~ 639351 (+) True CI01000072_00629638_00638277
CI01000072_00603805_00621584.mRNA mRNA upstream 139107 602642 ~ 621833 (+) True CI01000072_00603805_00621584
CI01000072_00453946_00487772.mRNA mRNA upstream 272306 453741 ~ 488634 (+) True CI01000072_00453946_00487772
CI01000072_00441183_00448301.mRNA mRNA upstream 312468 440626 ~ 448472 (+) True CI01000072_00441183_00448301
CI01000072_00404877_00406183.mRNA mRNA upstream 353848 404877 ~ 407092 (+) True CI01000072_00404877_00406183
CI01000072_00847890_00857227.mRNA mRNA downstream 49880 847199 ~ 857899 (+) True CI01000072_00847890_00857227
CI01000072_00873737_00876816.mRNA mRNA downstream 76418 873737 ~ 876902 (+) False CI01000072_00873737_00876816
CI01000072_01119954_01120757.mRNA mRNA downstream 321984 1119303 ~ 1120844 (+) True CI01000072_01119954_01120757
CI01000072_01145519_01157117.mRNA mRNA downstream 348200 1145519 ~ 1157875 (+) True CI01000072_01145519_01157117
CI01000072_01163522_01163779.mRNA mRNA downstream 365689 1163008 ~ 1163959 (+) True CI01000072_01163522_01163779
TU321805 other upstream 409652 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 1184211 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 3172938 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 3371785 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 3371785 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 3427519 4232318 ~ 4232421 (+) False G286474

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018236 False 3918 mRNA 0.48 19 NC_007126.7 27452318 ~ 27522387 (-)
bowfin (Amia calva) AMCG00005553 True 2514 mRNA 0.63 15 CM030142.1 4604876 ~ 4615951 (+)