RNA id: CI01000072_00453946_00487772.mRNA


Basic Information

Item Value
RNA id CI01000072_00453946_00487772.mRNA
length 2837
RNA type mRNA
GC content 0.47
exon number 14
gene id CI01000072_00453946_00487772
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 453741 ~ 488634 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATTAAAAATGAAATAATCACATATTTGTACTCCAAATTCTAGTCTTCATAATCCTGTGTTTTCCCAAGTCTCAGATGTTGCAGTATTGGCAGAAAATGGCTGCTAGTGTGAATTGACTTGTGCTTGCCTCCTGGGCTCTGTGCTGTCTGCTGTAGTGGGCTGGGCGACACGGTAAATGTCACTGATCGTCAAGCGCTTGTGCAATGGCTGCCCTTGCCAGAGAAAGTGCCGAGGTGGCAGATCCCGCCTTTGATTTAGACACTAAAGGCAGCAGAACAGCAAAAGCACTGAAGCATGAAGCCAGCCGCTGTTGCCCCAGGCGAGGTAAATCCTGCCAGGCTGACAGAAAATTACAGCAGGGACCTGGAACAGCCCTGACTCCCCACAGGCCTCAGTGTGCTAGCCAGCTCTGCCTCTGCAGCCAGGGTGAACCAGTGCACATGTGCGCACACACATACCCGCTGCATAAATGTGTGCTACCCACGGCTTCATGCCTCATGGGGACATTAATCCAGAAATCTGCATATGTGCTGCGCGCCTCGGGAGCCGGGACTGTCCAGACACGCCGGCGTGTGATTTCACATTGTTTTGAGCAAATTGCAGCTTCTGATGATGGGAATCTAATTCCCACCGTGCTCGTGGAGGGAGGGACACTTCCACATGCGCCCGCACACGTCCAGGGAGGGGGCATCCTAATACACCAAATTGCTGATACACATGTCGGCATTGCCTTCATTTCTCTGCAGGTTGGATCCATGTGGATGTTGCATGCACTTGACATGGGAGCAATTCAGTCACCGCCATCCGGCCGCAAAACAACAGAGGAGGAAAGGATTAATTGCCTTGGACTCTGCCCCCACTACAGGCCCAATTATGGAAACATATTGGCTCCCAGCGTTGCCACAGACACTGCTGTGCTGGGATATTGTGTGAAATTTCGAACCGTTTCCAGAGGTCAGGACGAGTGGACTGAAGCAGAGGCTGAGAAAAGAGTGGTTGATTTATATACATTGTTTTTCCTTCTCTCTGATTTGAGTAAGTATACTATAAGCAATACAAATCCAATGAAACCCAGTCACAGCTCAAATAAAGCCATACATTCCACCTGGAACCACTGGATGGGGAGCTGGGTGAGGGAAAAAAAATTACTGCAGGATGAGAAAGCTGTAGCCGAGCGTGCGGAGGGAAATATTGCAGGGATGAGATCCTTGTGTCGCCTCTACGCCTTCAGCACATCGAGTAGACAGGTCAAGCCAAGAGTAAATCAGCCTGTGCTCCCCAAGCCCAATTTCCCCCGAGAGCTCCATCCTAGACCCACTCAAATCAAAGCTATGAGGTGTGTGGATGATGGCTGGTGTTCAGGCACGCTCCCGGCGTTCCGCAGCTGCGGCTTTGAAAATAAAATAGGAGATGACTGCAAGGCTACGATCAGCTATCAGTTTAAACACAGTGTCCACTGCTGTCAATTTGGAAGACTGCCTATTTCCCTCCAAACCAGATCTAGAAAATGTCAAGCTGCCCGGCTCTTTAGCCCGTGGCTTGAAGCGATAATAACAGCCGTGAGTGAGAGGTGTCCGGGTGAAGGAGGGTCCCTTCTCGTAATGGTATCCGTCATTGCAGCGCAGAAGCTACTTGTCTGCAGTATAGTTCTTGTGTTTTGTCCTTGTGATCTCAGGGCCAGATCCCATAATCAATGCCTGAGCGGTGGCTTTGGCGCTGAGCGTGTTTGCCGTGAGTGGAGGAAGCAGCAGGAAGTGTTCAGGGCTGCTGAAAAATTAAGTCCCGTCGGTGTAATTCAGCAGTACACTGATAGCATCAGGTTTCAGTTGGCTGTATCAGGCAGTGAAATATTTATATGGGTTTTGGGAAGTGCTCTAGGTTCCAGTGAGTGGTCTGTTGGCTTCGCCGAGGAGGAGGAGGATGAGGAAGAAGCCACCGTCGACCAGAAGAGCCCAGTCCTCGTCTTTAATTAAGTATCTGAAACATCAATTTAAATGTAAATATCGGTGGTGCAGCTCCACTCATGCGTAAATTAGAGCGTTGGCCCGGCACATTGCTCTCTCTCTCTCCCAAGTCCCCGCTCACTTACTCTGACATCTGCTCACATCTGCTGGGCCCCGGGCTTTCCCCAACACACACACACACACACACACACACACACACACACGCACACACAATTAAAATGGGACTCATTCTTCTGCAAGCAGATTTGCATCCACAAATCTATTCTATACAAACTTATGAAGCATCATATACGTTGATATCACATACATTATTAGACTAGCAAAGTTTTGAAAAGTGACAGCCACGTTTGTTTGTCTGTGTGAATCATTCTGTAGTCTTAAAGAAAGCAGTCACTGCTCCTACTATCCCAAACTCACGATTAATGAAAGCCGTAGTGGTATCCTATAGTTTTAAACATGGATGACAACAATTAACATGTTTGATGTTAGCTATTTTGGCTAAACTAGCTTTATCTCCATAAAATGGCTTACATTTATCCACTTTTATCCAAAGCAACGCGAACTTCATTCCAAGGTATTCATTGTATAAGTTCTTGCTTTCCCTGAGAATCAAATCCATGACCTTGCCATTGCTAGCATCATGCTCTACTGTTTGAGCTACAGAAAAAGGCATGATGTGGTGTTTTCTTTCCTGTTTTGACATTTTTCCTATTAAAATTGTCTTATCCATCACTTTTTTTTTTTTTTTTATAATTAGCCAATAGACTTTTATTTACCTCACAGCACAAACATGTTTTGCTTCTTGCTATTGCTAGTCAAAAATGGGTAATATTGTAGAGTTGGTTGGAGAAAATGAGTATGTGCAGTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321834 lncRNA upstream 73583 379916 ~ 380158 (+) True G283951
TU321804 lncRNA upstream 153415 298283 ~ 300326 (+) True G283925
TU321777 lncRNA upstream 178248 275012 ~ 275493 (+) True CI01000072_00275132_00275592
TU321774 lncRNA upstream 190910 262612 ~ 262831 (+) True G283903
TU321652 lncRNA upstream 209832 240653 ~ 243909 (+) True G283797
TU321806 lncRNA downstream 151795 640429 ~ 642060 (+) True G283927
TU322027 lncRNA downstream 157037 645671 ~ 646059 (+) True G284111
TU322033 lncRNA downstream 173959 662593 ~ 662875 (+) True G284117
TU322037 lncRNA downstream 179139 667773 ~ 668011 (+) True G284121
TU322231 lncRNA downstream 257088 745722 ~ 745972 (+) True G284296
CI01000072_00441183_00448301.mRNA mRNA upstream 5269 440626 ~ 448472 (+) True CI01000072_00441183_00448301
CI01000072_00404877_00406183.mRNA mRNA upstream 46649 404877 ~ 407092 (+) True CI01000072_00404877_00406183
CI01000072_00400359_00403220.mRNA mRNA upstream 50227 399816 ~ 403514 (+) True CI01000072_00400359_00403220
CI01000072_00368515_00382013.mRNA mRNA upstream 71022 368515 ~ 382719 (+) True CI01000072_00368515_00382013
CI01000072_00338411_00351144.mRNA mRNA upstream 102465 337071 ~ 351276 (+) False CI01000072_00338411_00351144
CI01000072_00603805_00621584.mRNA mRNA downstream 114008 602642 ~ 621833 (+) True CI01000072_00603805_00621584
CI01000072_00629638_00638277.mRNA mRNA downstream 141004 629638 ~ 639351 (+) True CI01000072_00629638_00638277
CI01000072_00760940_00797319.mRNA mRNA downstream 272306 760940 ~ 797319 (+) True CI01000072_00760940_00797319
CI01000072_00847890_00857227.mRNA mRNA downstream 358565 847199 ~ 857899 (+) True CI01000072_00847890_00857227
CI01000072_00873737_00876816.mRNA mRNA downstream 385103 873737 ~ 876902 (+) False CI01000072_00873737_00876816
TU321805 other upstream 102453 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 1492896 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 3481623 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 3680470 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 3680470 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 3736204 4232318 ~ 4232421 (+) False G286474

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018245 False 549 mRNA 0.52 3 NC_007126.7 28006768 ~ 28082310 (-)
bowfin (Amia calva) TU158024 True 285 lncRNA 0.47 1 CM030137.1 2766255 ~ 2766539 (+)
tiger barb (Puntius tetrazona) TU158024 True 340 lncRNA 0.55 1 NC_056713.1 15204874 ~ 15205213 (-)