RNA id: CI01000072_00400359_00403220.mRNA


Basic Information

Item Value
RNA id CI01000072_00400359_00403220.mRNA
length 1671
RNA type mRNA
GC content 0.48
exon number 6
gene id CI01000072_00400359_00403220
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 399816 ~ 403514 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATAAATAGTGATGAATTTATTTATTCACACAATCACATACCTATGTCTATCAACAAATCAAAAATACATCTCTTTGTAGAACCACATTGAAACTTACCCAAATTATGAATCAATCTTCTTATTTACTTGAATGCCATAATTCACACACTTCATTTTACTTAGTCATGCACCTCTTAGAGCGACACCGGGCCCCAGCCATGCAGCCTGCTTTGCATAAAGTCAAAGGAGTGGGCAGGACATGGATGTTGAATGGATGTGCTTGTAAGGGCCTGTTGCGTGTGTATGCATATGTGAGGCAGAGCGTCTGTATGTGGGCGAGTATGTAAAGGCAGGTGGAAGTGGGTTGTTAAAACATTCTGTAGCTGTCATCGTGCTGAGAAGAGAGCAGAATGCAGCATAAAAATTGACTTTTAATGATAGATAATTGTTAAAAACTATCGTTTTTAATATTTAAGGATACCTATAAGTTGTTGCAAAGCTTGTTTTGCTTGGGGAAAAAAAAAAAAAACCTTCGGTGAATCTTTGTGTTGTCTATGCTGGAATGATCTCAAGTCGAAACAGCTTGCTTGTGTTTCTGCAAGCATGTGTGCTTTGCCATACACTCCGGTCATATGTAAAAGCATGCATGGAATCACAGTGCCTGGCATCCACTCTGGTGGCAGATGCCAGTAGGCACGATGCCTCCCTGGCTACGGCAGATGGCATTGTGAGCTGGGTAAAGCCAAAGGCTCAGTCCGAAACAATGAGGCCTGAGACAAAGTCTATCAGCATTGAGATATCTTCAAGGATGGCTCTGACTAATCCCATACCAATGGGGCCATGGAAGGCAATCTATGACCAAGAGAACTTCCAAGGCAAGCGCATGGAGTTCACCTCAGCCTGTCCAAACATAATGGAATGTGGCATGGATACTGTCCGCTCTCTGAAAGTGGAGTGTGGCGCATGGGTGGGCTTCGAGCATTCCAGCTTCTGTGGGCAGCAGTTTATCTTGGAGAGAGGCGACTACCCTCGCTGGGAGTCCTGGAGCGGCAGCAATGCCTACCACATCGAGAGGCTAATATCCTTCCGGCCAATCTGCTCTGCTAACCACAAGGAGTCAAAGATTACCGTCTTTGAGCGAGAGAACTTTATCGGACACCAGTGGGAGATAACTGACGACTACCCCTCTCTCCAGGCCATGGGCTGGCCCTCCAATGAGATCGGATCAATGCAGGTGCAAAGTGGGGCCTGGGTTTGTTACCAGTACCCCGGCTACCGTGGTTACCAGTACATCATGGAGTGTGACCACCATGGCGGCGAGTACAAACACTACAGGGAGTGGGGCTCCCACGCTCAGACCTTCCAGGTGCAGTCCCTCCGCCGGGTTCAACAGTGAGGGCAGCTCGCCCAGCTCCCTTCCTCCCTCCCCCACCTCCTCCTCCTCTTCCTCCACCTCCACCTCTTCCTCACCTCCACCCCTTCATTCCGATACCGGCAAGCCCAGCACAGGCTGAACGTCTGGTGCATTTGGCAAATGTTTACAGCGCTTTCTTCTTTCTGCATTCCATCGATTTGAAAGAAAAGAGTCAGAGGAAGAACTCAAGCAGACTGATTCTGTGAGCGGCACAGTGGTGTGATTTAAGCTTTGCTTCTCATCACTGTCATGATGCAGTCTGTGCAAAAGAGATCA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321834 lncRNA upstream 19658 379916 ~ 380158 (+) True G283951
TU321804 lncRNA upstream 99490 298283 ~ 300326 (+) True G283925
TU321777 lncRNA upstream 124323 275012 ~ 275493 (+) True CI01000072_00275132_00275592
TU321774 lncRNA upstream 136985 262612 ~ 262831 (+) True G283903
TU321652 lncRNA upstream 155907 240653 ~ 243909 (+) True G283797
TU321806 lncRNA downstream 236915 640429 ~ 642060 (+) True G283927
TU322027 lncRNA downstream 242157 645671 ~ 646059 (+) True G284111
TU322033 lncRNA downstream 259079 662593 ~ 662875 (+) True G284117
TU322037 lncRNA downstream 264259 667773 ~ 668011 (+) True G284121
TU322231 lncRNA downstream 342208 745722 ~ 745972 (+) True G284296
CI01000072_00368515_00382013.mRNA mRNA upstream 17097 368515 ~ 382719 (+) True CI01000072_00368515_00382013
CI01000072_00338411_00351144.mRNA mRNA upstream 48540 337071 ~ 351276 (+) False CI01000072_00338411_00351144
CI01000072_00315525_00322937.mRNA mRNA upstream 76747 313057 ~ 323069 (+) True CI01000072_00315525_00322937
CI01000072_00295802_00308710.mRNA mRNA upstream 90259 295201 ~ 309557 (+) True CI01000072_00295802_00308710
CI01000072_00275132_00275592.mRNA mRNA upstream 122548 273980 ~ 277268 (+) False CI01000072_00275132_00275592
CI01000072_00404877_00406183.mRNA mRNA downstream 1363 404877 ~ 407092 (+) True CI01000072_00404877_00406183
CI01000072_00441183_00448301.mRNA mRNA downstream 37112 440626 ~ 448472 (+) True CI01000072_00441183_00448301
CI01000072_00453946_00487772.mRNA mRNA downstream 50227 453741 ~ 488634 (+) True CI01000072_00453946_00487772
CI01000072_00603805_00621584.mRNA mRNA downstream 199128 602642 ~ 621833 (+) True CI01000072_00603805_00621584
CI01000072_00629638_00638277.mRNA mRNA downstream 226124 629638 ~ 639351 (+) True CI01000072_00629638_00638277
TU321805 other upstream 48528 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 1578016 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 3566743 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 3765590 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 3765590 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 3821324 4232318 ~ 4232421 (+) False G286474

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018251 False 967 mRNA 0.56 6 NC_007126.7 28086698 ~ 28094327 (-)