CI01000072_00368515_00382013 (FOXN1)


Basic Information

Item Value
gene id CI01000072_00368515_00382013
gene name FOXN1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 368515 ~ 382719 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_00368515_00382013.mRNA
ATAGCAGCCAGACCAATGATATACAGCATATTGGGCCTTTTTCAGTTCAACAGGGAACATGCTTAGTAGACAGTTGGAAAGGGATTTTCATTACAAGCAGTTACACATTTATGGCCTGTGAGACTATGCAGGTTGTAGGGACGATGTCCTCTGAGTCCCAGGGCCTGTCTTTTCCACCCGTAAGCAGCAGCAGCAGCAGCTCACCAATTCCTTCTCCTTGTGAACTACAATCCTTTGACCCTCTTGGGTCGCCCTGCTTTCAGATGCCAGAGTCACAGTGTCACCAGAGCAATGTTGGAGAGGGGTTTGCACCGTACTCCCAAAGAGAAAGTGTTCCCTACAGGCAGAAGAGTGCTATTGCGGAGCGCTTTCGTAGACACAGTATAGATGGAAGCCCTGTTGAACAAGATTCTGGCCTGACTGAGAACAATCACTACCATCCATACAGGCGTCAATGCAGTGAAGGGGCTATCAGTGAGGTTCAAACCTTCAGTTGTCTCAGAAGAGCTGGACTGGCTGGGAAACTCACCACGGCTGATGGATTGGAGGAACAATCCTCATGGAGTCCATTAAGCACTAATGTGGAGACGACTAGCATCATGGGAACTCAGCACCCCTACAGTGAGCCTCAGACAAGCTCTGAAGATCCTCCTGGCTACACATCAGTTAACCATCAGACGTACAGTGCCATCAGTCCTCTACAACATCAGTTTTACTCTTCAAGAGGAATAGACACGGTTTCTCACTACTATAGCCAAAGCCTCTCATCACAAACATCTCAAGACAATTCTGCCCAGACACTCTACCCTAAACCTGTCTACTCATACAGTATTCTCATCTTCCTGGCTCTGAGGAATAGCAAAACAGGCAGTCTGCCTGTAAGTGAGATCTACAGCTTCATGACGGATCATTTCCCCTATTTCAAGACAGCACCTGATGGCTGGAAGAATTCTGTCCGACACAACCTCTCTTTGAACAAGTGCTTTGAGAAAGTAGAGAACAAGAATGGGAACTCCTCTCGAAAGGGCTGTCTGTGGGCCCTGAACCCAGCGAAGGTTGAGAAGATGCAGGAGGAACTTCACAAGTGGAGACGTAAAGACCCGCTGACTGTAAGGAGGAGCATGGCCCGACCAGAGGAGCTGGAACGTCTGCTTGGGGAGAGGCCTGAAAAATTGAAGACTCTTGGAGCTCACTTCAGTCTACCAAGCAGCCATACACATTCTCAGTCCTTAAGAGTTGCCATGCATCCTGCCTATGGACACCAACCTGTCCATGAGACTAGTGTCCTGCATCATAAGTCTCTCTACAGCCCTTTACCCTCTCAAACTGTCGTCCCGCCTCCCCCCTACTTATCTCCAGACCCTTCAGTTTTCCCATACTACTCTCCTGTCGCCCATCAGCCCTGTGCTGGGCACCCCTCCAGTCCTGGGACAGGCAGCTTGGATTCACCCTTACCAGCACACACCCCACCAAGCTACAGCACCGCCTTGCAGGCTGGTCACAGCGCTACAGCGAGCATGCAGGAGCTTCTGCTGGACGGAGAAATCAGTAATGATGTCGATGCATTAAATCCCAGCCTCACAGATCTACAATTACATGGGAATCTTTGGGAGGAGCTAAGGAATGACAGCCTCGCTCCAGATACACTGGTAGTTATGGACACAACCCCTTCCCTACCCCAGCTCAGTCCCAGTCAAGCACAGGATAGCGTGAGGGTTTGTGGGTGTCTATCGGAGACTGAAGGAAACACTCCTATTCCTCTTCTATGAGAAAGTAACCTCTGTGTAGCATCCCATCAAGCCATATTTTTTCCAAAGTAGAAAAGTTTATATTTTTGAATGTCTAAATTGTGTGACTTCTATGCTGAATAGTGCACTTGAGTTATACAAATTACATTAGCTTTAATGTTTTTAATGCATAAATGTCCAATCCCCACTATCAAATTTTTGACTCCAAAGCCCCCATTGTCCACAACAATATTCGAAGTCCCCATGATTTTTCAAGTCATTCATGATTTACAGGATAAGGATTAAGGATAAAAAAAAAAAAAATGTACAAAATTTCTACCTGAAAAAATATACTAGAGTCATAACTACTGAATATGAATATAAAAATGAATATTTATATTAATGTATAAAACTTCCCATGTAATTGTAAGATTTTATTAATTCGCATGACCACAAAGTTCTGTAAGCATTTAATGCTCAAAATCACTTTAATGTGGCCTAAATTGAACAATATCTTAATTTTTGTTTTGTTGACGTTTGCTGTAATTCAGCGATATATTAATATTGTTTGCTTTTGTGCAAGTGTTATTTTTTTTAAATCTATAAAAGTGTTTGACTTGGTAAGATTTTAATAAGACATTCTGGACTTGTTATAGTCAGTATTGATTTATTGTTTGCATTTGCCATAGCAACCACTAGGGGGTGTGGTTGCCTCTTTTTTTATACTGTCTTTCCACAGTAATACACA

Function

symbol description
foxn1 Enables transcription cis-regulatory region binding activity. Acts upstream of or within thymus development. Predicted to be located in nucleus. Is expressed in pharyngeal arch; pharyngeal arch 3-7 skeleton; thymic epithelium; thymus; and thymus primordium. Human ortholog(s) of this gene implicated in T-cell immunodeficiency, congenital alopecia, and nail dystrophy; alopecia; nail disease; and primary immunodeficiency disease. Orthologous to human FOXN1 (forkhead box N1).

NR:

description
Forkhead box N1

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09407 FOXN; forkhead box protein N

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_00368515_00382013.mRNA True 2475 mRNA 0.44 10 368515 382719

Neighbor

gene id symbol gene type direction distance location
CI01000072_00338411_00351144 NA coding upstream 17239 337071 ~ 351288 (+)
CI01000072_00315525_00322937 SARM1 coding upstream 45446 313057 ~ 323069 (+)
CI01000072_00295802_00308710 NA coding upstream 58958 295201 ~ 309557 (+)
CI01000072_00275132_00275592 NA coding upstream 91247 273980 ~ 277268 (+)
CI01000072_00245767_00246460 NA coding upstream 121834 244444 ~ 246681 (+)
CI01000072_00400359_00403220 CRYBA1A, CRB12, CRYBA1, CRYBA4 coding downstream 17097 399816 ~ 403514 (+)
CI01000072_00404877_00406183 DHRS13A.3, DHR13 coding downstream 22158 404877 ~ 407092 (+)
CI01000072_00441183_00448301 NA coding downstream 57907 440626 ~ 448472 (+)
CI01000072_00453946_00487772 NA coding downstream 71022 453741 ~ 488634 (+)
CI01000072_00603805_00621584 NA coding downstream 219923 602642 ~ 621833 (+)
G283925 NA non-coding upstream 68189 298283 ~ 300326 (+)
G283903 NA non-coding upstream 105684 262612 ~ 262831 (+)
G283797 NA non-coding upstream 124606 240653 ~ 243909 (+)
G283793 NA non-coding upstream 146477 221802 ~ 222038 (+)
G283927 NA non-coding downstream 257710 640429 ~ 642060 (+)
G284111 NA non-coding downstream 262952 645671 ~ 646059 (+)
G284117 NA non-coding downstream 279874 662593 ~ 662875 (+)
G284121 NA non-coding downstream 285054 667773 ~ 668011 (+)
G284296 NA non-coding downstream 363003 745722 ~ 745972 (+)
G284742 NA other downstream 1598811 1981530 ~ 1985140 (+)
G285428 NA other downstream 3587538 3970257 ~ 3976214 (+)
G286470 NA other downstream 3786385 4169104 ~ 4175651 (+)
CI01000072_04225105_04268007 SIK2B, SIK2 other downstream 3842119 4224789 ~ 4268148 (+)
CI01000072_04338747_04342064 SDHD other downstream 3956000 4338719 ~ 4343266 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009286 foxn1 coding NC_007126.7 CM002899.2 28129683 ~ 28161224 (-)