RNA id: CI01000072_00368515_00382013.mRNA


Basic Information

Item Value
RNA id CI01000072_00368515_00382013.mRNA
length 2475
RNA type mRNA
GC content 0.44
exon number 10
gene id CI01000072_00368515_00382013
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 368515 ~ 382719 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAGCAGCCAGACCAATGATATACAGCATATTGGGCCTTTTTCAGTTCAACAGGGAACATGCTTAGTAGACAGTTGGAAAGGGATTTTCATTACAAGCAGTTACACATTTATGGCCTGTGAGACTATGCAGGTTGTAGGGACGATGTCCTCTGAGTCCCAGGGCCTGTCTTTTCCACCCGTAAGCAGCAGCAGCAGCAGCTCACCAATTCCTTCTCCTTGTGAACTACAATCCTTTGACCCTCTTGGGTCGCCCTGCTTTCAGATGCCAGAGTCACAGTGTCACCAGAGCAATGTTGGAGAGGGGTTTGCACCGTACTCCCAAAGAGAAAGTGTTCCCTACAGGCAGAAGAGTGCTATTGCGGAGCGCTTTCGTAGACACAGTATAGATGGAAGCCCTGTTGAACAAGATTCTGGCCTGACTGAGAACAATCACTACCATCCATACAGGCGTCAATGCAGTGAAGGGGCTATCAGTGAGGTTCAAACCTTCAGTTGTCTCAGAAGAGCTGGACTGGCTGGGAAACTCACCACGGCTGATGGATTGGAGGAACAATCCTCATGGAGTCCATTAAGCACTAATGTGGAGACGACTAGCATCATGGGAACTCAGCACCCCTACAGTGAGCCTCAGACAAGCTCTGAAGATCCTCCTGGCTACACATCAGTTAACCATCAGACGTACAGTGCCATCAGTCCTCTACAACATCAGTTTTACTCTTCAAGAGGAATAGACACGGTTTCTCACTACTATAGCCAAAGCCTCTCATCACAAACATCTCAAGACAATTCTGCCCAGACACTCTACCCTAAACCTGTCTACTCATACAGTATTCTCATCTTCCTGGCTCTGAGGAATAGCAAAACAGGCAGTCTGCCTGTAAGTGAGATCTACAGCTTCATGACGGATCATTTCCCCTATTTCAAGACAGCACCTGATGGCTGGAAGAATTCTGTCCGACACAACCTCTCTTTGAACAAGTGCTTTGAGAAAGTAGAGAACAAGAATGGGAACTCCTCTCGAAAGGGCTGTCTGTGGGCCCTGAACCCAGCGAAGGTTGAGAAGATGCAGGAGGAACTTCACAAGTGGAGACGTAAAGACCCGCTGACTGTAAGGAGGAGCATGGCCCGACCAGAGGAGCTGGAACGTCTGCTTGGGGAGAGGCCTGAAAAATTGAAGACTCTTGGAGCTCACTTCAGTCTACCAAGCAGCCATACACATTCTCAGTCCTTAAGAGTTGCCATGCATCCTGCCTATGGACACCAACCTGTCCATGAGACTAGTGTCCTGCATCATAAGTCTCTCTACAGCCCTTTACCCTCTCAAACTGTCGTCCCGCCTCCCCCCTACTTATCTCCAGACCCTTCAGTTTTCCCATACTACTCTCCTGTCGCCCATCAGCCCTGTGCTGGGCACCCCTCCAGTCCTGGGACAGGCAGCTTGGATTCACCCTTACCAGCACACACCCCACCAAGCTACAGCACCGCCTTGCAGGCTGGTCACAGCGCTACAGCGAGCATGCAGGAGCTTCTGCTGGACGGAGAAATCAGTAATGATGTCGATGCATTAAATCCCAGCCTCACAGATCTACAATTACATGGGAATCTTTGGGAGGAGCTAAGGAATGACAGCCTCGCTCCAGATACACTGGTAGTTATGGACACAACCCCTTCCCTACCCCAGCTCAGTCCCAGTCAAGCACAGGATAGCGTGAGGGTTTGTGGGTGTCTATCGGAGACTGAAGGAAACACTCCTATTCCTCTTCTATGAGAAAGTAACCTCTGTGTAGCATCCCATCAAGCCATATTTTTTCCAAAGTAGAAAAGTTTATATTTTTGAATGTCTAAATTGTGTGACTTCTATGCTGAATAGTGCACTTGAGTTATACAAATTACATTAGCTTTAATGTTTTTAATGCATAAATGTCCAATCCCCACTATCAAATTTTTGACTCCAAAGCCCCCATTGTCCACAACAATATTCGAAGTCCCCATGATTTTTCAAGTCATTCATGATTTACAGGATAAGGATTAAGGATAAAAAAAAAAAAAATGTACAAAATTTCTACCTGAAAAAATATACTAGAGTCATAACTACTGAATATGAATATAAAAATGAATATTTATATTAATGTATAAAACTTCCCATGTAATTGTAAGATTTTATTAATTCGCATGACCACAAAGTTCTGTAAGCATTTAATGCTCAAAATCACTTTAATGTGGCCTAAATTGAACAATATCTTAATTTTTGTTTTGTTGACGTTTGCTGTAATTCAGCGATATATTAATATTGTTTGCTTTTGTGCAAGTGTTATTTTTTTTAAATCTATAAAAGTGTTTGACTTGGTAAGATTTTAATAAGACATTCTGGACTTGTTATAGTCAGTATTGATTTATTGTTTGCATTTGCCATAGCAACCACTAGGGGGTGTGGTTGCCTCTTTTTTTATACTGTCTTTCCACAGTAATACACA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09407 FOXN; forkhead box protein N

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321804 lncRNA upstream 68189 298283 ~ 300326 (+) True G283925
TU321777 lncRNA upstream 93022 275012 ~ 275493 (+) True CI01000072_00275132_00275592
TU321774 lncRNA upstream 105684 262612 ~ 262831 (+) True G283903
TU321652 lncRNA upstream 124606 240653 ~ 243909 (+) True G283797
TU321648 lncRNA upstream 146477 221802 ~ 222038 (+) True G283793
TU321806 lncRNA downstream 257710 640429 ~ 642060 (+) True G283927
TU322027 lncRNA downstream 262952 645671 ~ 646059 (+) True G284111
TU322033 lncRNA downstream 279874 662593 ~ 662875 (+) True G284117
TU322037 lncRNA downstream 285054 667773 ~ 668011 (+) True G284121
TU322231 lncRNA downstream 363003 745722 ~ 745972 (+) True G284296
CI01000072_00338411_00351144.mRNA mRNA upstream 17239 337071 ~ 351276 (+) False CI01000072_00338411_00351144
CI01000072_00315525_00322937.mRNA mRNA upstream 45446 313057 ~ 323069 (+) True CI01000072_00315525_00322937
CI01000072_00295802_00308710.mRNA mRNA upstream 58958 295201 ~ 309557 (+) True CI01000072_00295802_00308710
CI01000072_00275132_00275592.mRNA mRNA upstream 91247 273980 ~ 277268 (+) False CI01000072_00275132_00275592
CI01000072_00245767_00246460.mRNA mRNA upstream 121834 244444 ~ 246681 (+) True CI01000072_00245767_00246460
CI01000072_00400359_00403220.mRNA mRNA downstream 17097 399816 ~ 403514 (+) True CI01000072_00400359_00403220
CI01000072_00404877_00406183.mRNA mRNA downstream 22158 404877 ~ 407092 (+) True CI01000072_00404877_00406183
CI01000072_00441183_00448301.mRNA mRNA downstream 57907 440626 ~ 448472 (+) True CI01000072_00441183_00448301
CI01000072_00453946_00487772.mRNA mRNA downstream 71022 453741 ~ 488634 (+) True CI01000072_00453946_00487772
CI01000072_00603805_00621584.mRNA mRNA downstream 219923 602642 ~ 621833 (+) True CI01000072_00603805_00621584
TU321805 other upstream 17227 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 1598811 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 3587538 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 3786385 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 3786385 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 3842119 4232318 ~ 4232421 (+) False G286474

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018256 True 2047 mRNA 0.50 9 NC_007126.7 28130557 ~ 28161224 (-)