RNA id: CI01000072_00441183_00448301.mRNA


Basic Information

Item Value
RNA id CI01000072_00441183_00448301.mRNA
length 1358
RNA type mRNA
GC content 0.47
exon number 4
gene id CI01000072_00441183_00448301
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 440626 ~ 448472 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATTAAATCCCGGTCAATTTTAAAGTGGGGTCCTGCATGGGGGGTCACCTCAGATGTTCTCTGTTGGTCTTCCTCTCCAGTGTTCTCCTAACTCACACATTGGTGCTTTTCATGAGAAACATGGTTTCTGCTTCAGTACTTTCTTGTTCTTTTTAGAGCGTCAGCGTTTCTGAGTTTGATTTTCAAGGGCGAGAACATCTAATTGTGTCTAGCCTGCTCTGAACGGTATCTCTGATTCACAGCCCAAAACCACAGAAGAACAAGAACACTCGAGGAGCGAGCGCGAACCTCCTTTTATCTAGCAGTCGTTTAATTCTTTCTACGATATTGTTTGAATGCTTCTCGTATTTCTCGCATGGATTTATTAGTAACTCTTTGATCTATTTCAGTCAGTCTAAAACAGTCGCCTTTTTTTCTCTCTAGATGAAATACTTGAAAGCCGCTCTGCAGACGAGCTCCATTATTTGTTTTTACATCAAAAGTTTCATTAGTTATTCCATTAATCATAGTCATGTAAAGGGGCTGGAGAGTGACGGAGTGGCAGGCTTTAGCCCGCATGGCCCTGCTCTGGGGAGATCTGGGAAGGGGGAATGAAAACAGACAGGGCCGGCTTGGCTGCCAAGTGGAGATGATCCAGGAGCGGGCAGAGAGGAATGCAAACGAGTGGAGAGGGGGGTTGAGAAGGGGTGTTTGGAGAGAGAAACACTTGAGCGCTGGAACAGGCAGCCTGGTAATGGAATCGCAGCAGGTAAAGCAGACTTGCCCATCCGATGGCGGCGCAGGGCACCGTCCGTATTACGGCACAGCTCTGTGCAGGCGTGGCACCGTTCCGGGCATCGAAGGGGGTGTGCCACCCACCCCCTGCAGTGACCCTCTGCAGAGACAGACAGACGGACAGATGGAGGAACTGAGGGGGCCCTTCCCGGAAAACCGCCACCTTCTGCCAGTACCTAATGACCCACTTTTAGCTATGAGGAACACTGTGCATGTGGAATGGCATCAACTTCTTTCCGGGGCTGTTGAGCTGATGGCGTATTGCATATTAACCAAACTGCAAATTGGATTTGGGGATGTTGATGAGTCTACAAGTGCTGGATTGCCCGTCAAAAATTCCCAACCTTCACAGTTATCTAGTATTTATAGGCCATTATGTAATGTGGCCCCGGGATATGAACTTGTTGTCTGAAATGAAGTTTTTGCCAACAAATTGGATGGTTTTATTGAAATTAGCAAGTTATAAAGTTCTACACAACTTGCCCCCTTTGTGTGTTTGATTGTTAAATATTTTAGCTTAATTTTATGCTTGCTTTCAGCTACCAATAATGGTAAAACTTTAGTATGGGGATAGGGCTGTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321834 lncRNA upstream 60468 379916 ~ 380158 (+) True G283951
TU321804 lncRNA upstream 140300 298283 ~ 300326 (+) True G283925
TU321777 lncRNA upstream 165133 275012 ~ 275493 (+) True CI01000072_00275132_00275592
TU321774 lncRNA upstream 177795 262612 ~ 262831 (+) True G283903
TU321652 lncRNA upstream 196717 240653 ~ 243909 (+) True G283797
TU321806 lncRNA downstream 191957 640429 ~ 642060 (+) True G283927
TU322027 lncRNA downstream 197199 645671 ~ 646059 (+) True G284111
TU322033 lncRNA downstream 214121 662593 ~ 662875 (+) True G284117
TU322037 lncRNA downstream 219301 667773 ~ 668011 (+) True G284121
TU322231 lncRNA downstream 297250 745722 ~ 745972 (+) True G284296
CI01000072_00404877_00406183.mRNA mRNA upstream 33534 404877 ~ 407092 (+) True CI01000072_00404877_00406183
CI01000072_00400359_00403220.mRNA mRNA upstream 37112 399816 ~ 403514 (+) True CI01000072_00400359_00403220
CI01000072_00368515_00382013.mRNA mRNA upstream 57907 368515 ~ 382719 (+) True CI01000072_00368515_00382013
CI01000072_00338411_00351144.mRNA mRNA upstream 89350 337071 ~ 351276 (+) False CI01000072_00338411_00351144
CI01000072_00315525_00322937.mRNA mRNA upstream 117557 313057 ~ 323069 (+) True CI01000072_00315525_00322937
CI01000072_00453946_00487772.mRNA mRNA downstream 5269 453741 ~ 488634 (+) True CI01000072_00453946_00487772
CI01000072_00603805_00621584.mRNA mRNA downstream 154170 602642 ~ 621833 (+) True CI01000072_00603805_00621584
CI01000072_00629638_00638277.mRNA mRNA downstream 181166 629638 ~ 639351 (+) True CI01000072_00629638_00638277
CI01000072_00760940_00797319.mRNA mRNA downstream 312468 760940 ~ 797319 (+) True CI01000072_00760940_00797319
CI01000072_00847890_00857227.mRNA mRNA downstream 398727 847199 ~ 857899 (+) True CI01000072_00847890_00857227
TU321805 other upstream 89338 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 1533058 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 3521785 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 3720632 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 3720632 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 3776366 4232318 ~ 4232421 (+) False G286474

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00019183 True 429 lncRNA 0.54 3 NC_007126.7 28010730 ~ 28015128 (-)
tiger barb (Puntius tetrazona) TU158027 True 201 lncRNA 0.52 1 NC_056713.1 15210936 ~ 15211136 (-)