RNA id: TU321804



Basic Information


Item Value
RNA id TU321804
length 1491
lncRNA type intronic
GC content 0.34
exon number 2
gene id G283925
representative True

Chromosome Information


Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 298283 ~ 300326 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGTATTTTAATCGAAAGCTTGGCAAACAGCTTTAGAGAATTTGATGTTTCCCCATTCAAAGAGATAGGAGCTGCACTTGGATGCCCGAGAGGCGTTTCAAAGATGGCCGCCGAGTGAAATGACTTCTCTTAAAGGGACTTTGACATTTCTCCGTGTTTCTCGTCAGTTTTATCAAAGCTTTTTAATTTTTAATTAATAAATTTAAGATCATCATGTTTGCAGCGAACAATATATTTCTGACCTAGTGGAATAATAGTAATAATATCTAGGTCTGAATTGAAATAGGCTATATTGTACGTTTTAATGGATCACGCTACAAACATAATGATCTTATAATACATGATGCATTGCTCTCTCCGTTATCGCATAAATTCCCACTTTTGTACACTTTTGCTTTAACGGACTTTAGACTGCAAAATCAAGCTGTTATATTCATATATTTATTGTCCAACATTCCCATTTTTTCTGATGCATGTCCTTAATTTAATTTCATATGTTGGTAATAATTCAGTGTTTATAAGCCTTTTAAAATATTTTAACCCAAACTGACTGGGTTTCTAGAGAGCAAAGATTTTGTGAAAAAAGTGGAAGACTTAAACACAAAGTGTGTAAAATAAACTGTAAAAAGGATTTGATGATCAGTATTTTATTCTGTGTTGTCATCATTCAGGTTGGATTTCAGCTTTAATGTATTTTTTTTTTTTTTTTTAAACAAAGCAGCTGATATTGCCATAGTTCTAGTGGACTGCCGACTCGCTTTCACCCCAAAATTGCGGAAGCGCAGGGCCGCTGCTGGGCGCCGGTGTTTCAATGGAACGTTCTATTGAGTGTCGCTTCTTGTTAGTGTATATTCTTTGGTTTTATCCACCTTATTCCTACGCCCCATGACGCTTTGCGCCAATTATGGGTGTAACTTCCGTTAATGAAAAAAGCTCTTGCCATAGATATTCTTGTTATAACATGTTATATTAAAATACCAAGCGTTACCTTATTCTCATGTTGTCTGAAAATAAAACATTAAAGAAAAATTGACAGCTCATTCAGTCAAACTGACGGATAAGCTTTATTTGTAGGGCAACCTTATGATTTGTAATGATTCGTTTGTCTTTTTAAATGAAGTTCCCCAAACCGGAAGTGCAACCCATAATTCGAAACGCAGTAGACTCGTCAGGAATAAGGTGGATAGCAATAAATAGCAATAATAGATTGGTTAAGTAACATTACCCACAGTCCACTTTAAGTACTTTTGTTAATATTTATACTTCAGTGATTATATGGTATCTTTCCTTGATCGTCTGAAATGTATGTTAGCAAAATGTTACGCTAGCATAGCATATGTTTTTAATGATACTGAGTCCAAAACGTCTTGAATGCTTTTATTTTATGTTTCGCTGTAGGCTATATGTTTTTATTTTTTTTTAGTTTGGGTGTATTTTATTATTTTTATTTGGATTTTTTGTTCATGTTTTGTGTGTTTTTCAAAATAAATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU321777 lncRNA upstream 22790 275012 ~ 275493 (+) True CI01000072_00275132_00275592
TU321774 lncRNA upstream 35452 262612 ~ 262831 (+) True G283903
TU321652 lncRNA upstream 54374 240653 ~ 243909 (+) True G283797
TU321648 lncRNA upstream 76245 221802 ~ 222038 (+) True G283793
TU321645 lncRNA upstream 83050 209265 ~ 215233 (+) True G283790
TU321834 lncRNA downstream 79590 379916 ~ 380158 (+) True G283951
TU321806 lncRNA downstream 340103 640429 ~ 642060 (+) True G283927
TU322027 lncRNA downstream 345345 645671 ~ 646059 (+) True G284111
TU322033 lncRNA downstream 362267 662593 ~ 662875 (+) True G284117
TU322037 lncRNA downstream 367447 667773 ~ 668011 (+) True G284121
CI01000072_00275132_00275592.mRNA mRNA upstream 21015 273980 ~ 277268 (+) False CI01000072_00275132_00275592
CI01000072_00245767_00246460.mRNA mRNA upstream 51602 244444 ~ 246681 (+) True CI01000072_00245767_00246460
CI01000072_00196391_00200157.mRNA mRNA upstream 97778 196391 ~ 200505 (+) True CI01000072_00196391_00200157
CI01000072_00146339_00152728.mRNA mRNA upstream 144897 146339 ~ 153386 (+) True CI01000072_00146339_00152728
CI01000072_00127835_00129847.mRNA mRNA upstream 168276 127755 ~ 130007 (+) True CI01000072_00127835_00129847
CI01000072_00315525_00322937.mRNA mRNA downstream 12731 313057 ~ 323069 (+) True CI01000072_00315525_00322937
CI01000072_00338411_00351144.mRNA mRNA downstream 36745 337071 ~ 351276 (+) False CI01000072_00338411_00351144
CI01000072_00368515_00382013.mRNA mRNA downstream 68189 368515 ~ 382719 (+) True CI01000072_00368515_00382013
CI01000072_00400359_00403220.mRNA mRNA downstream 99490 399816 ~ 403514 (+) True CI01000072_00400359_00403220
CI01000072_00404877_00406183.mRNA mRNA downstream 104551 404877 ~ 407092 (+) True CI01000072_00404877_00406183
TU321805 other downstream 48798 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 1681204 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 3669931 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 3868778 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 3868778 4169104 ~ 4175651 (+) True G286470

Expression Profile