RNA id: CI01000072_00245767_00246460.mRNA


Basic Information

Item Value
RNA id CI01000072_00245767_00246460.mRNA
length 1835
RNA type mRNA
GC content 0.36
exon number 4
gene id CI01000072_00245767_00246460
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 244444 ~ 246681 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAGAATCACAGATGTTTCTAACAAAACTTTTCCATATGGTAGCGTGCGCCACTAATGAGTGTCCCACCAAAAACAAACCCTACATACTTTAGTTCCGGGAAGAAACTATGACTATTTAGCTATGACTAAATATAAATGAACTATAAAAATCAGAAATCGGTTTAGATCAAATTAAATTTATTAGTGGTAGTTAGTCTATTTTCCACGTTTGATTAGACGGATCTATTTAATTAATGGCTAAATAATCATGTGCCATTACAATTATTTGTCACAAAGCTGCAGATGGCAGATTATGATATTACAGTGTAAATTATGACAGTATTAAATCACATGTTTAATTCAAATTCAGAGTACTTCTTGTTTACTCTTATGGAGCCTGATTTATTTAGTTTACCCCTAAATGTTAATTAATGTATTAATTATCAAACATGTATTAACGTGTAGTAAAACTAAATCTATTGCAATTTTTCTTTCTAAATTAGGCTATACCAGGAAAATATACTCTCGTTCCATGAAGTTACAGGGCGAGTACAATAAAAACATATACACACAATCTGACATCACTGACTATCAAACCTTTATTTGAAAAACAAATTATTTCAAAACAGATTTACTCTTTTTCTTCTTTTTTTTTTCTTCTTTATTTCTTTTTATCAACATTACATTTCAAATGCTAACGTCCTGATAGAGAGTAGCACATTTCCCCTTTTTTGTTTCTCTTGCTTGGCTTCTTCCTCCTCTTGTTCCTCGTCTTTCTTTTCACTGATGAATCTTAAGAAGGAATCCCATGTCTTTTACTATTCTGTATTATGTATTAAAAGAAAATAAAGTACATCCAAGACAGGGCTGGACTGGGACAAAAAAATCTGCCCTGGTATATTTTGATCCAGGCGGCCCACCACCACTTCGATTTTATATATATATATATATATATATATTTTCCCAAAGAAAAGAAGCTCAATGTCAAAGTAGTTATTGAATTAATTTTAATTTATTTAGTGAAAATATAAGTATGCAACTGTGTACAACACTAGAATTTAAAATGTTGCCAGTAATCTCAGTAATAGAAGAATAAGAGAGGAAGGCAGAGAATAAGTTAATAAATAATCAATTATCAAACACAGTGATTACCACTGTAAAGCTGCTTTGAAACAATTTGTATTGTAAAAATCACTATATAAATAAAGATGACTTGACTTGATTACAGTACTGGTCTCTTTATTATTGAAACTTAAGTATTTGCAAGTTCACAAAGCAAAAATGGCATGTGCATATCACTCCAGCTCTCCTCAAACAAATGAGGACAGCCTTTAGGAGAGATGCTGGAGGGTGGAGGTCGCAGAGACAAAGGTAGCGAGCCATCTTACTTCCGGTGGGGCGTGTGGATGTTTGTGAGAAATGAGTTTAGCACGCAACAGTTTATGTGCCATGTGAGTCGCATTACAGGTGCGGGCCAACATGCAAGTGATGTTACAGTGGGCTTTGTGTCTCGTTTAAATCTCTGTTTGGATGCCTGTCGTGCTGGCTGCTTCGCTTTACTTCGCTTTACTACTTCTACTTCTTCGTGTCATCGGACCTTTGTCACTACGATCATTATACTGTTCCTGTGAATCAAGGGAGACTGGATCACAGCCTGCTGCTGGATTGGACTGATCTCTCCGCGTTGTAAACTAGTTTTAGCTCGTGTCGTGTGTCGTCACACGGTGTCTTTTTGCTAACCGTTTATATTTGCAGCGTCTAATACCCGCTGAATCAGCTGGACTGTGGTTTGGGCTTGTGGCGTGCAGGTGCCTTTACCATCAATTGGAATTGTGTGAGTAACAAACTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321652 lncRNA upstream 535 240653 ~ 243909 (+) True G283797
TU321648 lncRNA upstream 22406 221802 ~ 222038 (+) True G283793
TU321645 lncRNA upstream 29211 209265 ~ 215233 (+) True G283790
TU321624 lncRNA upstream 101725 142489 ~ 142719 (+) True G283777
TU321622 lncRNA upstream 104866 139092 ~ 139578 (+) True G283776
TU321774 lncRNA downstream 15931 262612 ~ 262831 (+) True G283903
TU321777 lncRNA downstream 28331 275012 ~ 275493 (+) True CI01000072_00275132_00275592
TU321804 lncRNA downstream 51602 298283 ~ 300326 (+) True G283925
TU321834 lncRNA downstream 133235 379916 ~ 380158 (+) True G283951
TU321806 lncRNA downstream 393748 640429 ~ 642060 (+) True G283927
CI01000072_00196391_00200157.mRNA mRNA upstream 43939 196391 ~ 200505 (+) True CI01000072_00196391_00200157
CI01000072_00146339_00152728.mRNA mRNA upstream 91058 146339 ~ 153386 (+) True CI01000072_00146339_00152728
CI01000072_00127835_00129847.mRNA mRNA upstream 114437 127755 ~ 130007 (+) True CI01000072_00127835_00129847
CI01000072_00114969_00116445.mRNA mRNA upstream 127757 114931 ~ 116687 (+) True CI01000072_00114969_00116445
CI01000072_00079524_00085764.mRNA mRNA upstream 157968 78303 ~ 86476 (+) True CI01000072_00079524_00085764
CI01000072_00275132_00275592.mRNA mRNA downstream 27299 273980 ~ 277268 (+) False CI01000072_00275132_00275592
CI01000072_00295802_00308710.mRNA mRNA downstream 48520 295201 ~ 309557 (+) True CI01000072_00295802_00308710
CI01000072_00315525_00322937.mRNA mRNA downstream 66376 313057 ~ 323069 (+) True CI01000072_00315525_00322937
CI01000072_00338411_00351144.mRNA mRNA downstream 90390 337071 ~ 351276 (+) False CI01000072_00338411_00351144
CI01000072_00368515_00382013.mRNA mRNA downstream 121834 368515 ~ 382719 (+) True CI01000072_00368515_00382013
TU321805 other downstream 102443 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 1734849 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 3723576 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 3922423 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 3922423 4169104 ~ 4175651 (+) True G286470

Expression Profile