CI01000072_00114969_00116445 (CBLN20)


Basic Information

Item Value
gene id CI01000072_00114969_00116445
gene name CBLN20
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 114931 ~ 116687 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_00114969_00116445.mRNA
ATATAAAAACCTTAAACAACAATTCAGGCATCGGGGTAATGAGCTATGATGATGCTTGTCTCTTTGCCTCTGAAGTGTGTCTGACTGATGTGGCGTCCTGTGGATGCTGCCTGATGCAGAAGCAGATGTGGAAGATGGAGACGTTTTTCAACATGAGCTTAAATGAGCTAGAAAGGGGACTGGGGAGAGCTCATGCAGTGTTAAACAATATCCGTGCCAGTCGGAGTGCCTTCTCTGTGGCTCTTACTGACACGCACCTATGTGTCGGCCCAAATCGAGAAGACTCTGTTGTGAAGTATGGCAGTGTATTTATTAACTTGGGAGATGGCTACAGCACTAACACTGGTGTCTTTGTAGCACCACGTTCTGGTGTCTACAGCCTGGCACTAACTGTTTATAGTGATGCTGGTGCTGCTGGAGCCGCATTAGCTGCTTGTGCTCGACTCCGGCTGAATGGGCGCACACTTGCATCACCGAGTGAGAAGAACAATCAAGACCAGGAGGACAGTGTTAGCGCTCTGCTAGCAGTGCAGCTGCATGCAGGGGACAGGGTGGATGTTGCTCTTCCAGCCGGTTGCGTTCTGTGTGATGACAACAACCACTACAACACTTTCACCGGGTTCCTGCTCTATGCAACTGATTAATATAGAGAGAACTAATGCTGTTTTCGAAATTACATACTGCACAGTTTATACTGAATATTACATTTTTTTTTTTTTTTTTTTTAAATGTATAAAATACAATACTAAGTGTGCAACATTTACTTAAAGTTGATCTTGTTGTATGCTACTTTGTGATTTCAATAGTGCAAGAATGTTATATTTCCTCTGCCCTCTTAACAAATGCTATGTTTCTCTCTCTGTAGCACCCTGTATGTTTACACATA

Function

NR:

description
Si:rp71-1g18.10 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_00114969_00116445.mRNA True 886 mRNA 0.44 2 114931 116687

Neighbor

gene id symbol gene type direction distance location
CI01000072_00079524_00085764 NA coding upstream 28455 78303 ~ 86476 (+)
CI01000072_00055224_00076836 NA coding upstream 37576 55178 ~ 77355 (+)
CI01000072_00127835_00129847 NA coding downstream 11068 127755 ~ 130007 (+)
CI01000072_00146339_00152728 TAGLN coding downstream 29652 146339 ~ 153386 (+)
CI01000072_00196391_00200157 NA coding downstream 79704 196391 ~ 200505 (+)
CI01000072_00245767_00246460 NA coding downstream 127757 244444 ~ 246681 (+)
CI01000072_00275132_00275592 NA coding downstream 157293 273980 ~ 277268 (+)
G283760 NA non-coding upstream 17501 97223 ~ 97430 (+)
G283715 NA non-coding upstream 94334 20382 ~ 20597 (+)
G283772 NA non-coding downstream 18337 135024 ~ 135223 (+)
G283776 NA non-coding downstream 22405 139092 ~ 139578 (+)
G283777 NA non-coding downstream 25802 142489 ~ 142719 (+)
G283790 NA non-coding downstream 92578 209265 ~ 215233 (+)
G283793 NA non-coding downstream 105115 221802 ~ 222038 (+)
CI01000072_00338411_00351144 NA other downstream 232437 337071 ~ 351288 (+)
G284742 NA other downstream 1864843 1981530 ~ 1985140 (+)
G285428 NA other downstream 3853570 3970257 ~ 3976214 (+)
G286470 NA other downstream 4052417 4169104 ~ 4175651 (+)
CI01000072_04225105_04268007 SIK2B, SIK2 other downstream 4108151 4224789 ~ 4268148 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008882 cbln20 coding NC_007126.7 CM002899.2 572195 ~ 576135 (-)