G283790


Basic Information

Item Value
gene id G283790
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 209265 ~ 215233 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU321645
AGATTTGTCAAGATGTTCAATCAGCGCATCATGCAGGACAACCGCACTGTGAAATATCCCTTTGATGGGACTGGATGGAAACAGTTTTCCAATATTAACAATTGTCTGGTCCACTTGCTCAAATACAGAAACATCACATGGCAGAGACTTAATGACAGAACCCCAACTGCTACTGACCTGACTTATCTCTTGTTGAATCTGAGGGTCTGGATTTCTTCTAGACAGAATGACAATGTTTCCTCCTCCTTTCTGAGCAATGAACTTTACTGTTTCAAAGCCCAACCCTGTTAGACCACCTGTGACAATATAGACAGAATTTTTCTTGAATAGAATGTGTTTGGGCATTGCTGGAATGTCAGACAGCTGGTTCTTGTCTTCACTGTTCAGGATGATAATGGGTAGGATCTGGCATCTGAAGTATGATTCAGATTCTTTAACAGATGGAAGATCAGTGTCTTGAGATTTCGCTCTTTGAACAGCTGTTGCATCCAAAGACAAGGACTTTCTGTCCAAATGCATGGATTTCAGCCAACGGTAGATGTGTGGCATTTGCATTTGCAGAGACCCTTTTTGCATTATTTGGGTCATAAGAAGGGCATGGAAGCGGACTTCCTCATTTGTACCTCTGAATGTTGTAGTATTGAATGGAAATTCTGTCTGGTTGTCATAGACAAGAACAATGTCTTTGATGCCTCTAACACTGCTAGCTATTTCAGCAGTTTCTAAATTATAAGGAGGTAGGAGAACAGCTCCTACAACCTCACTAAAATCACAAGACAGCTGATCAGCCTGCGTGCTCACTCTGACATTCCAACCTGATCTGTTTGCAATAGCAATTAACACATTCATCAAAGCTGAGTTTGGAACAGTGGAGAAAATACCCAATTTCCATTGCTGTTTAGCTTTGGGTAAAGCCTCATGCAAGATCTCCCAAGCCAGTACCATATAAGAGACACAAGGCATGTCATTCAAGAATGAAAGCCTTTTAGCTTTGCAGCAAACAGCTGCTGGAAGAACCACTTTAGTGGTGGCAGCAACAGGGTAACAAGACACAACATGATCACCAACTTTAAATTTGCTGACATCTTTACCCACAGCTGTGACAGTGCCACTGAAGTCAAGGGCTATGAGCTTATGGTTTTCATTTGTGTGCTTGTTCCAGTACAATGTCTTACCATAATTCAGGTCAGAAATGCTGACTGGAAAGTAATCTGATGAATGAACACAGATTTTACTGAGATGAAGCTCAATATTTTTTCCTTGAATCAGTTCAATGGTATTATCCATTTGAGTCGCTGACACATTTGTCATTATATATGGGTCAGATGTTTGCAAGATGAAGACTTCTTCATCCAACTTGTGGACATTTCTTGAAGAGATTGCCATGGTTGGCAAAGGTGTGTGGGCGATTTCAGGTTTGAGAATTTTGCCCTCCTTCACTACTAGCTCTGGATATTTGTTACAGGGGTATGATCTGAGGACCTGAACCAAAGCTTTGATGTCTTCAAAAGTGGCAGAGCCCATGTCAATCAGCTGGAAGGAAAGTTCTGGCAACTCAGCTGCACATGCTCTTATCATGCCTGACAGAACAAACCCAATGTTTATGTGGTCCACTAAGCTCTCAGAGCACCTAAAGGTTATAACTCTGATATTACCTGGGAAATAAAGTGCCTTAAGATATCTGACAATCTTTCGGACAATCTCACAATACCCTGCCATACTGTCTAAGACCTTCTCTGATTCAAGAGAGGTTATGTCTGCATCGCCCCACATGAACAAAATTTCCTGGAAGTTTTTCTTTACACTTGAAATTTTCAGTTTTGACAAAAGAAGTTCAATTCCATCTTTTAACAGTATGTTACTGTTTGAAGAAGACACATATCTAGATGTTGGGTCCAAGTACTGTTGCAAAGCTTTAGAAATTCCTACCTGGTCAGAAAAGACAAGTGCCTTAATCGGTGTATCAAACGTGGCAACTTCAGAGATGATACTGAAATTGTTATGGAAGAAGTACTCCTTGACCACTTGGGAATGACTTCCTAGCATTCTGATTTTCACATGCCTGAGTTCAACCAACACCCTACCCTGTTTGTTGGTTAAGCAGCCAAAAATGTCAATATCATCTTCTTCCACATGTACTGCTCTCAGATATACAAACATCTCCTCTTGCAATGGTTCAAATACAGTCAGGCTTCCTATTTGTGCAGGAAATTGTGGTCTTGCTGATAGGTCATGCCTTATAGTTGCAGGAACAAGTTGCATGAAGTAATCCAAGACCACAGGGTGAAGGTGATACTCATGTAATTCAGGTAGTAATTCCTTTGGGACCTTCACAACAGATATAGCCTCTCTAAATTCTTTCCCACAGTAAACATCTGCATTATTTCTGAAGACTGACCCATACTCAAATCCTGATTGACTTAGATGCCTGTAGATATCTTCAGTAGTCATGTGGAATGTGCATCTTTTGGAAATGCAGTCTAATGAAATTAACTGTTCTTCAGGACTTCTACCTGGTTTTGCTTCTACTGTGCCAAATGCATAGACTGCAGAAGCAGACTGTATTTTGAAGTTACATGTGTTATTGGCCAAATGGTCTGAATGATCCAGCTGTACTTTCAAATCTGGGGCATTCTGCATGAAAACAAATGGACTCTGGAATGTTATGCTGAGCTGCAGAGAACTTAGTGGAACCTTAGGGTTTGCATATGCCATGTAAGTTGCTAAACCCAACTCTGCATAAAATGCCCCAGGAATGATGGCAACCCCACTGTGCTTGTGGTCTTGCAGGAAGGCCACTGATTCAGAGGATAAATCACAGCTGAACATCGAACTGTCTGTACCCATTTGTGTAACTACTGGATGGTTGCCAGTGGGGCCGATCGACTGCAAACGTGTAACGAAGACATCTTTCTTCACATCATCAAACTGGTATCGTGGGTAGGGAATTGGTTCAGCCTCAAAACCTTTATAGAAAATTTCCCAGTCCACTTTGACCCCAAGTTCAAACAGTTTGGAAACAGCTACAAGCATTGTCTCGTGATCTTTATCAGGCTGCACTGAGGGAATCACAGTGAAGTCATTTCCCAGAGTCTCAGTGATGTACCTCTGCAAAGATCTTCTTGGACCAATTTCAACAAATATCACAGTCCTTTTGCTTTTAGCTGCAGACTTTACAGCTTGTTCAAATTTAACTGGCTCTCTGACATTTCTTGCCCAGTATTCACCAGTAATAAAATCTGAGGAACACAAACTAACACCTGTCACTGTTGAGAACAATTCTGTCTCCAAATTATGTGCCTGCAATGGGCCTATACTTTCTTTCACTTTGGATAAAATGGGATCCATCTTGTGACTGTGGTATGCTGCAGGTACATCTAAAATGCGAAGGAACAAATCTTTTCCACTAGCTGAGTTGCTCAAATTCTGTTGCAACCTGTCAATGTCATCTGCATCTCCTGAGAGGGTGCATGACTGAGGGCTGTTATAAGCAGCCAGACAAACCCTTCCTGAACAAGTTGGAAGAATTTTCAAGACTTCAGAAACAGCCATATTACTGACTACCAGCATCTTCCCTCCTGTCACAGTGCTTTGCAAAGAACTGCGATAGTGGATGACTTTCACTGCATCTTCAAGTGACAGCAAACCAGAACAATGAGATGCAGCGACTTCTCCAATAGAGTGGCCCAAAACAGCATCAGGACTGATGCCCCAGTGTTTCAGAAGTTTGACAACAGCAACCTGAATAGCAAACAGAATAGGCTGTACAATGCTTGGATCAGACAGCTCTGTACTTTTCTCAGATTCACTTTCCAGCACCTCTATCAGATTCAAACTTCTGTAGCTTTGCAACAGAGTTTCAATCTTCACGATTTCCTCTCTGAAAACTGGCTCTTGTTTTAGGAGCTGCTTGCACATACCCTGATATGTAACACCATTGCCACAAAACACAAAAACTAGCTTGGAGTCTGTCTTTGATGGTACAAGCTTTTTCTTTACAGCAGCAGTAAGTTTCTCTTGCAGATCTGCCAGTGATGATGTTTGAAATACTTTTCTGTATTTGTGTTTCAAGTGACTTCTTCTACATGCGGATGTGTACAGTAAAGACTGTAGATCTGATATTTTCCCTGCACTGATCTGTTTTACAGTATCTTCAATAATATTTTTCATGGATTTTTCAGAGGCTGCAGAGACCACAAAATACTGATGGGATTTGCTTATCTGCTGATCTTTTGGCTTTTTTGACTGCACATATTGTCTGACAATTGCATGTGCATTTGTTCCACCAAACCCAAAGTTATTGATTCCTGCTAATCTCCCTGCTCTGCAGTCACTGATCCATTTTTCTGATGTGGTGGGGATTTTCACGTTGAGAGATTCAGTGTCTATGCTGGAGTTTTCCACGGAGTAGAACAATGATGGCACAATGGTTTCATGCTGCATCATCAAAAGAACCTTAATGAGCCCTGCAACACCTGCGGCAGATTCTGTGTGTCCAATATTGCTTTTAACAGAACCAATGATGAGTGGCCCTGACTTTTGAGGTCTTGCTTTGGCAATGACTTTTGAGATGCTACCCGCCTCTATTGGATCTCCAATTGGAGTCCCAGTTCCATGAGCCTCAATGTACTGGACACTAGTCAGGTCAGTCTCTGTTGAGTAGATTTTTCTAAGAAGCTCCTCCTGCTGTACCATGGATGGTTTGGTGATTGGACTAATGGTGTGGCCATCTTGATTTACTGCAGTTTTGCTGATGATACCCCAAATATGATCATGGTCTTCAAAAGCCTTTTTTCAGAGGCTTTAATAGAACAACCCCGCATCCTTCACCTCTGCCATATCCGTCTGCTTTGCTGCTGAAAGGTTTACTCATTCCATCAGAGGAGATCATATGTGACTTGGAGAGGGCCACAAAAATGGTCGGCTCCAAAATACAGGTCACACCGCCACACAAGGCCATATCACAATCTCCTGTTGAGTGGAATACAGATAACCACAAAGCTTAGGGGGGTGGGGGCAGCCTAATGGCTAATAAGTTATTTGATTAATTCAATAAAATGTAGGAACAAGGAGCTATAGCTTGTCTTGTTTCATCAACATTTTTAATAAGGCACATAACCAGTCTCAAATTAATTGACAGAGATAAGTAAGTGTATTGAAAGATGATTTTTCACAGTTTTTTTCCCCCCAGATACACTTGCACACAATTATAAGATCATTTGCTGAAAGTTTGTTCCATGCATCTTGAAGTTGCCCAGCTCTGCTATGGATTTAGGCTTTAGTCTCAATTGCTTCTTTTTCTGTCTGTGTTGGTCATACTATCTGCTGTAGAACTACTTTTCAGTATTACAGTAATTGCAAAAGGAATGTTTGAAAATCTACAATTGATATTTCTAATGGCACTCTAAAGCACAACATACATGAAACACAAAGCATCTAATGTCTTTTGCACAGTACTGTTAATTAATACACATACAAACAATATACAGTATATCGACAATCTTCTTAAAATGTGCAAATAAGTTAATCCACAGGGTTTACATACATATTTTTGAAGACTACCTTGTTTTATGGCTTGACAAGCCAAGTGAAGGGCGACAAGGGATGAGGAGCAGGCACAATCAATGGACAGTGAGGGGCCAGTGAAGTTGAATGTGTATGAGATGCGGTTGGCAGCTATGCTCATAGCGGCACCAGTGCCACTGGTGTGGTCTAAGTGTTTTGGATTATTCCTCACATTTTTCAGCTCAAAGTCTCTGTTCATTAGGCCTGAGAAACAAGCAAACAAAAAAACATGTTAGATGTGTTAGCTGGCAATATGCTTTTATCCATAGCCACTTACTGTACAGTGCAACCAAGGGGTTAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU321645 True 5867 lncRNA 0.41 2 209265 215233

Neighbor

gene id symbol gene type direction distance location
CI01000072_00196391_00200157 NA coding upstream 8760 196391 ~ 200505 (+)
CI01000072_00146339_00152728 TAGLN coding upstream 55879 146339 ~ 153386 (+)
CI01000072_00127835_00129847 NA coding upstream 79258 127755 ~ 130007 (+)
CI01000072_00114969_00116445 CBLN20 coding upstream 92578 114931 ~ 116687 (+)
CI01000072_00079524_00085764 NA coding upstream 122789 78303 ~ 86476 (+)
CI01000072_00245767_00246460 NA coding downstream 29211 244444 ~ 246681 (+)
CI01000072_00275132_00275592 NA coding downstream 58747 273980 ~ 277268 (+)
CI01000072_00295802_00308710 NA coding downstream 79968 295201 ~ 309557 (+)
CI01000072_00315525_00322937 SARM1 coding downstream 97824 313057 ~ 323069 (+)
CI01000072_00338411_00351144 NA coding downstream 121838 337071 ~ 351288 (+)
G283777 NA non-coding upstream 66546 142489 ~ 142719 (+)
G283776 NA non-coding upstream 69687 139092 ~ 139578 (+)
G283772 NA non-coding upstream 74042 135024 ~ 135223 (+)
G283760 NA non-coding upstream 111835 97223 ~ 97430 (+)
G283715 NA non-coding upstream 188668 20382 ~ 20597 (+)
G283793 NA non-coding downstream 6569 221802 ~ 222038 (+)
G283797 NA non-coding downstream 25420 240653 ~ 243909 (+)
G283903 NA non-coding downstream 47379 262612 ~ 262831 (+)
G283925 NA non-coding downstream 83050 298283 ~ 300326 (+)
G284742 NA other downstream 1766297 1981530 ~ 1985140 (+)
G285428 NA other downstream 3755024 3970257 ~ 3976214 (+)
G286470 NA other downstream 3953871 4169104 ~ 4175651 (+)
CI01000072_04225105_04268007 SIK2B, SIK2 other downstream 4009605 4224789 ~ 4268148 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1271297 LOC106590247 non-coding NC_048579.1 CM023233.2 23196452 ~ 23203364 (-)