RNA id: TU321645


Basic Information

Item Value
RNA id TU321645
length 5867
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G283790
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 209265 ~ 215233 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATTTGTCAAGATGTTCAATCAGCGCATCATGCAGGACAACCGCACTGTGAAATATCCCTTTGATGGGACTGGATGGAAACAGTTTTCCAATATTAACAATTGTCTGGTCCACTTGCTCAAATACAGAAACATCACATGGCAGAGACTTAATGACAGAACCCCAACTGCTACTGACCTGACTTATCTCTTGTTGAATCTGAGGGTCTGGATTTCTTCTAGACAGAATGACAATGTTTCCTCCTCCTTTCTGAGCAATGAACTTTACTGTTTCAAAGCCCAACCCTGTTAGACCACCTGTGACAATATAGACAGAATTTTTCTTGAATAGAATGTGTTTGGGCATTGCTGGAATGTCAGACAGCTGGTTCTTGTCTTCACTGTTCAGGATGATAATGGGTAGGATCTGGCATCTGAAGTATGATTCAGATTCTTTAACAGATGGAAGATCAGTGTCTTGAGATTTCGCTCTTTGAACAGCTGTTGCATCCAAAGACAAGGACTTTCTGTCCAAATGCATGGATTTCAGCCAACGGTAGATGTGTGGCATTTGCATTTGCAGAGACCCTTTTTGCATTATTTGGGTCATAAGAAGGGCATGGAAGCGGACTTCCTCATTTGTACCTCTGAATGTTGTAGTATTGAATGGAAATTCTGTCTGGTTGTCATAGACAAGAACAATGTCTTTGATGCCTCTAACACTGCTAGCTATTTCAGCAGTTTCTAAATTATAAGGAGGTAGGAGAACAGCTCCTACAACCTCACTAAAATCACAAGACAGCTGATCAGCCTGCGTGCTCACTCTGACATTCCAACCTGATCTGTTTGCAATAGCAATTAACACATTCATCAAAGCTGAGTTTGGAACAGTGGAGAAAATACCCAATTTCCATTGCTGTTTAGCTTTGGGTAAAGCCTCATGCAAGATCTCCCAAGCCAGTACCATATAAGAGACACAAGGCATGTCATTCAAGAATGAAAGCCTTTTAGCTTTGCAGCAAACAGCTGCTGGAAGAACCACTTTAGTGGTGGCAGCAACAGGGTAACAAGACACAACATGATCACCAACTTTAAATTTGCTGACATCTTTACCCACAGCTGTGACAGTGCCACTGAAGTCAAGGGCTATGAGCTTATGGTTTTCATTTGTGTGCTTGTTCCAGTACAATGTCTTACCATAATTCAGGTCAGAAATGCTGACTGGAAAGTAATCTGATGAATGAACACAGATTTTACTGAGATGAAGCTCAATATTTTTTCCTTGAATCAGTTCAATGGTATTATCCATTTGAGTCGCTGACACATTTGTCATTATATATGGGTCAGATGTTTGCAAGATGAAGACTTCTTCATCCAACTTGTGGACATTTCTTGAAGAGATTGCCATGGTTGGCAAAGGTGTGTGGGCGATTTCAGGTTTGAGAATTTTGCCCTCCTTCACTACTAGCTCTGGATATTTGTTACAGGGGTATGATCTGAGGACCTGAACCAAAGCTTTGATGTCTTCAAAAGTGGCAGAGCCCATGTCAATCAGCTGGAAGGAAAGTTCTGGCAACTCAGCTGCACATGCTCTTATCATGCCTGACAGAACAAACCCAATGTTTATGTGGTCCACTAAGCTCTCAGAGCACCTAAAGGTTATAACTCTGATATTACCTGGGAAATAAAGTGCCTTAAGATATCTGACAATCTTTCGGACAATCTCACAATACCCTGCCATACTGTCTAAGACCTTCTCTGATTCAAGAGAGGTTATGTCTGCATCGCCCCACATGAACAAAATTTCCTGGAAGTTTTTCTTTACACTTGAAATTTTCAGTTTTGACAAAAGAAGTTCAATTCCATCTTTTAACAGTATGTTACTGTTTGAAGAAGACACATATCTAGATGTTGGGTCCAAGTACTGTTGCAAAGCTTTAGAAATTCCTACCTGGTCAGAAAAGACAAGTGCCTTAATCGGTGTATCAAACGTGGCAACTTCAGAGATGATACTGAAATTGTTATGGAAGAAGTACTCCTTGACCACTTGGGAATGACTTCCTAGCATTCTGATTTTCACATGCCTGAGTTCAACCAACACCCTACCCTGTTTGTTGGTTAAGCAGCCAAAAATGTCAATATCATCTTCTTCCACATGTACTGCTCTCAGATATACAAACATCTCCTCTTGCAATGGTTCAAATACAGTCAGGCTTCCTATTTGTGCAGGAAATTGTGGTCTTGCTGATAGGTCATGCCTTATAGTTGCAGGAACAAGTTGCATGAAGTAATCCAAGACCACAGGGTGAAGGTGATACTCATGTAATTCAGGTAGTAATTCCTTTGGGACCTTCACAACAGATATAGCCTCTCTAAATTCTTTCCCACAGTAAACATCTGCATTATTTCTGAAGACTGACCCATACTCAAATCCTGATTGACTTAGATGCCTGTAGATATCTTCAGTAGTCATGTGGAATGTGCATCTTTTGGAAATGCAGTCTAATGAAATTAACTGTTCTTCAGGACTTCTACCTGGTTTTGCTTCTACTGTGCCAAATGCATAGACTGCAGAAGCAGACTGTATTTTGAAGTTACATGTGTTATTGGCCAAATGGTCTGAATGATCCAGCTGTACTTTCAAATCTGGGGCATTCTGCATGAAAACAAATGGACTCTGGAATGTTATGCTGAGCTGCAGAGAACTTAGTGGAACCTTAGGGTTTGCATATGCCATGTAAGTTGCTAAACCCAACTCTGCATAAAATGCCCCAGGAATGATGGCAACCCCACTGTGCTTGTGGTCTTGCAGGAAGGCCACTGATTCAGAGGATAAATCACAGCTGAACATCGAACTGTCTGTACCCATTTGTGTAACTACTGGATGGTTGCCAGTGGGGCCGATCGACTGCAAACGTGTAACGAAGACATCTTTCTTCACATCATCAAACTGGTATCGTGGGTAGGGAATTGGTTCAGCCTCAAAACCTTTATAGAAAATTTCCCAGTCCACTTTGACCCCAAGTTCAAACAGTTTGGAAACAGCTACAAGCATTGTCTCGTGATCTTTATCAGGCTGCACTGAGGGAATCACAGTGAAGTCATTTCCCAGAGTCTCAGTGATGTACCTCTGCAAAGATCTTCTTGGACCAATTTCAACAAATATCACAGTCCTTTTGCTTTTAGCTGCAGACTTTACAGCTTGTTCAAATTTAACTGGCTCTCTGACATTTCTTGCCCAGTATTCACCAGTAATAAAATCTGAGGAACACAAACTAACACCTGTCACTGTTGAGAACAATTCTGTCTCCAAATTATGTGCCTGCAATGGGCCTATACTTTCTTTCACTTTGGATAAAATGGGATCCATCTTGTGACTGTGGTATGCTGCAGGTACATCTAAAATGCGAAGGAACAAATCTTTTCCACTAGCTGAGTTGCTCAAATTCTGTTGCAACCTGTCAATGTCATCTGCATCTCCTGAGAGGGTGCATGACTGAGGGCTGTTATAAGCAGCCAGACAAACCCTTCCTGAACAAGTTGGAAGAATTTTCAAGACTTCAGAAACAGCCATATTACTGACTACCAGCATCTTCCCTCCTGTCACAGTGCTTTGCAAAGAACTGCGATAGTGGATGACTTTCACTGCATCTTCAAGTGACAGCAAACCAGAACAATGAGATGCAGCGACTTCTCCAATAGAGTGGCCCAAAACAGCATCAGGACTGATGCCCCAGTGTTTCAGAAGTTTGACAACAGCAACCTGAATAGCAAACAGAATAGGCTGTACAATGCTTGGATCAGACAGCTCTGTACTTTTCTCAGATTCACTTTCCAGCACCTCTATCAGATTCAAACTTCTGTAGCTTTGCAACAGAGTTTCAATCTTCACGATTTCCTCTCTGAAAACTGGCTCTTGTTTTAGGAGCTGCTTGCACATACCCTGATATGTAACACCATTGCCACAAAACACAAAAACTAGCTTGGAGTCTGTCTTTGATGGTACAAGCTTTTTCTTTACAGCAGCAGTAAGTTTCTCTTGCAGATCTGCCAGTGATGATGTTTGAAATACTTTTCTGTATTTGTGTTTCAAGTGACTTCTTCTACATGCGGATGTGTACAGTAAAGACTGTAGATCTGATATTTTCCCTGCACTGATCTGTTTTACAGTATCTTCAATAATATTTTTCATGGATTTTTCAGAGGCTGCAGAGACCACAAAATACTGATGGGATTTGCTTATCTGCTGATCTTTTGGCTTTTTTGACTGCACATATTGTCTGACAATTGCATGTGCATTTGTTCCACCAAACCCAAAGTTATTGATTCCTGCTAATCTCCCTGCTCTGCAGTCACTGATCCATTTTTCTGATGTGGTGGGGATTTTCACGTTGAGAGATTCAGTGTCTATGCTGGAGTTTTCCACGGAGTAGAACAATGATGGCACAATGGTTTCATGCTGCATCATCAAAAGAACCTTAATGAGCCCTGCAACACCTGCGGCAGATTCTGTGTGTCCAATATTGCTTTTAACAGAACCAATGATGAGTGGCCCTGACTTTTGAGGTCTTGCTTTGGCAATGACTTTTGAGATGCTACCCGCCTCTATTGGATCTCCAATTGGAGTCCCAGTTCCATGAGCCTCAATGTACTGGACACTAGTCAGGTCAGTCTCTGTTGAGTAGATTTTTCTAAGAAGCTCCTCCTGCTGTACCATGGATGGTTTGGTGATTGGACTAATGGTGTGGCCATCTTGATTTACTGCAGTTTTGCTGATGATACCCCAAATATGATCATGGTCTTCAAAAGCCTTTTTTCAGAGGCTTTAATAGAACAACCCCGCATCCTTCACCTCTGCCATATCCGTCTGCTTTGCTGCTGAAAGGTTTACTCATTCCATCAGAGGAGATCATATGTGACTTGGAGAGGGCCACAAAAATGGTCGGCTCCAAAATACAGGTCACACCGCCACACAAGGCCATATCACAATCTCCTGTTGAGTGGAATACAGATAACCACAAAGCTTAGGGGGGTGGGGGCAGCCTAATGGCTAATAAGTTATTTGATTAATTCAATAAAATGTAGGAACAAGGAGCTATAGCTTGTCTTGTTTCATCAACATTTTTAATAAGGCACATAACCAGTCTCAAATTAATTGACAGAGATAAGTAAGTGTATTGAAAGATGATTTTTCACAGTTTTTTTCCCCCCAGATACACTTGCACACAATTATAAGATCATTTGCTGAAAGTTTGTTCCATGCATCTTGAAGTTGCCCAGCTCTGCTATGGATTTAGGCTTTAGTCTCAATTGCTTCTTTTTCTGTCTGTGTTGGTCATACTATCTGCTGTAGAACTACTTTTCAGTATTACAGTAATTGCAAAAGGAATGTTTGAAAATCTACAATTGATATTTCTAATGGCACTCTAAAGCACAACATACATGAAACACAAAGCATCTAATGTCTTTTGCACAGTACTGTTAATTAATACACATACAAACAATATACAGTATATCGACAATCTTCTTAAAATGTGCAAATAAGTTAATCCACAGGGTTTACATACATATTTTTGAAGACTACCTTGTTTTATGGCTTGACAAGCCAAGTGAAGGGCGACAAGGGATGAGGAGCAGGCACAATCAATGGACAGTGAGGGGCCAGTGAAGTTGAATGTGTATGAGATGCGGTTGGCAGCTATGCTCATAGCGGCACCAGTGCCACTGGTGTGGTCTAAGTGTTTTGGATTATTCCTCACATTTTTCAGCTCAAAGTCTCTGTTCATTAGGCCTGAGAAACAAGCAAACAAAAAAACATGTTAGATGTGTTAGCTGGCAATATGCTTTTATCCATAGCCACTTACTGTACAGTGCAACCAAGGGGTTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321624 lncRNA upstream 66546 142489 ~ 142719 (+) True G283777
TU321622 lncRNA upstream 69687 139092 ~ 139578 (+) True G283776
TU321618 lncRNA upstream 74042 135024 ~ 135223 (+) True G283772
TU321605 lncRNA upstream 111835 97223 ~ 97430 (+) True G283760
TU321557 lncRNA upstream 188668 20382 ~ 20597 (+) True G283715
TU321648 lncRNA downstream 6569 221802 ~ 222038 (+) True G283793
TU321652 lncRNA downstream 25420 240653 ~ 243909 (+) True G283797
TU321774 lncRNA downstream 47379 262612 ~ 262831 (+) True G283903
TU321777 lncRNA downstream 59779 275012 ~ 275493 (+) True CI01000072_00275132_00275592
TU321804 lncRNA downstream 83050 298283 ~ 300326 (+) True G283925
CI01000072_00196391_00200157.mRNA mRNA upstream 8760 196391 ~ 200505 (+) True CI01000072_00196391_00200157
CI01000072_00146339_00152728.mRNA mRNA upstream 55879 146339 ~ 153386 (+) True CI01000072_00146339_00152728
CI01000072_00127835_00129847.mRNA mRNA upstream 79258 127755 ~ 130007 (+) True CI01000072_00127835_00129847
CI01000072_00114969_00116445.mRNA mRNA upstream 92578 114931 ~ 116687 (+) True CI01000072_00114969_00116445
CI01000072_00079524_00085764.mRNA mRNA upstream 122789 78303 ~ 86476 (+) True CI01000072_00079524_00085764
CI01000072_00245767_00246460.mRNA mRNA downstream 29211 244444 ~ 246681 (+) True CI01000072_00245767_00246460
CI01000072_00275132_00275592.mRNA mRNA downstream 58747 273980 ~ 277268 (+) False CI01000072_00275132_00275592
CI01000072_00295802_00308710.mRNA mRNA downstream 79968 295201 ~ 309557 (+) True CI01000072_00295802_00308710
CI01000072_00315525_00322937.mRNA mRNA downstream 97824 313057 ~ 323069 (+) True CI01000072_00315525_00322937
CI01000072_00338411_00351144.mRNA mRNA downstream 121838 337071 ~ 351276 (+) False CI01000072_00338411_00351144
TU321805 other downstream 133891 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 1766297 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 3755024 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 3953871 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 3953871 4169104 ~ 4175651 (+) True G286470

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1452316 True 6831 lncRNA 0.43 2 NC_048579.1 23196452 ~ 23203364 (-)