RNA id: CI01000072_00275132_00275592.mRNA


Basic Information

Item Value
RNA id CI01000072_00275132_00275592.mRNA
length 3119
RNA type mRNA
GC content 0.39
exon number 2
gene id CI01000072_00275132_00275592
representative False

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 273980 ~ 277268 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATAAAACTGATGAGAAACACTGTGAAATGTCGAAGCTGTCCTCTCCAGCAGCTTTAATGTTTTCCCGGTTGCCATGTCAACTTTCTAACGGCCACCAGCACTAACGTAAACATAACAATAAAAAAAGGTTTAGCGTCTTTGCAAAGTTAACTTTATTTTATACATTTTTAAAAAAGCTATTTATTCGTAAAGACTCACCTCGGAAAAATAAATTCTTCTGTCAGACGCAGTTGAAGTAAAAAGTGCCTGAGTTGTCCTTATTCAGTATCTGCTGTCAGATGAAAAGGTGTAGGCTATGTCTATCATTATTACAACGTTAGCCTCATAAATTGTTACAAAATAAAAAGTTTCACACCTCAGAAAAATTAACTTTACTCTCTTGTCAACATACTGTTGCACTCCATTTGTGGAGGCTCGCGCTGTATGTCACGTCACTATATTCTGACTTGGTGAAAAGAAACATTTTTTTCTTAAAGGAACACTCCACTTTTTTTGAAAATAGGCTCATTTTCCAACTCCCATAGAGTTAAACAGTTGAGTTTTACAGTTTTCAAATCCATTCAGCCGATCTCCGGGTCTGGCGGTACCACTTTTAGCATAGCTTAGCATAGTTCATTGAATCTAATTAGACCGTTAGCATCTCGCTTAAAAATGACCAAAGAGTTTCGATATTTTTCCTATTTAAAACTGGACTCTTCTGTAGTTACATCGTGTACTAAGACCGACGAAAAATGAAAAGTTGCGATTTTCTAGGCCAATATGGCTAGGAACTATACTCTCATTCCGGCGTAATAATCAAGGAACTTTGCTGCCGTACCATGGGTGCAGCAGGCGCAATGATATTACGCAGCGCCTGTGACCCCCTGCTTGCACAGGGAGCGTGCCTTGCAACCATGGAGACATTTGTGAGAGACGCTGTGCAATATCATTGCGCCTGCTGCACCCACGGTACGGCAGCAAAGTTCCTTGATGCGGATGTATACAGCGTCTCTAACAAATGTCTCCATGGTTGCAAGGCACGTTCCCCTATGAAAAACTTAAAGTGCTGGGATACGTTCCTCTTTTGCTACTGGGGAAGTGTTCAAAGGCCCATAGGTGGACAGCGGAGGTCCAGTGTCCCTTTGAGTTCCCACCTGAGGGACATAAGGTGATGGAAAAAATGCTCATACTCTTTGAGCATATTTTACAAGGTTTTGGTCCAGAAAAAGAACAAGAGGTCACAGAAGGTAATGAAGCAGAATGGCAGGACTTGAAAGAGACTGTAGAAGATGAAGAGGACATTACACTGGAGAACAATGTAGAAGTGGAAAGACTGGAGGATGAAGAGCAGATCGAAGAACAACAGATAGAAAGTGGGGAGGAAGAACCAAAGAGGCCTGTTGAGGCCTCAAAAGTTGAGTTTCAAAAGTCCAGAAAAAGAACAAGAGGACACAGAGGGTGATAGGACAGAGAGTCAGGACATAAACGAGGCTGTAGACGATGAAGAGAACATTTTATCAGAGAACAATGTAGAAGTGAGGATGAAGGAAAGATTGGAGGATGAAGAGCAGATCGAAGAACAACAGACAGAAAGTGGGGGGGAAGAACCAGAGAGGCCTGTTAATGAAGAAGGGGAAATGAAAGTGACAAAAAAGACTAAACAGTCTTTTGATTTTCAAATCAGAAATTTAATCATAATCATTTGGAGAATTTGATGTTTCCCCATTCAGAGAGATAGGAGCTGCATTTGGATGCCCAAGAGGCATTTCAAAGATGATCGCAGTGTGAAATTACTTGTCTTAAAGGGACCTTTGGGTAAAGCCTATACAATGAGCAAGGAACAATGTGAACTCAGGCTCAATGAAAACTGTTTTTGACGTACTTGAACAAAGCTAAAACTTTTTTTTTTTTTACTTTTACAAATCAGCTGTCAACATGGCAGCCAAAAGAAAGCAGAAAATACAGACACAGGTATGAAATGTATACAATTAAGTTTTCAGTGGTCTTAAACTGAAAGGACCACAGCCTTGCACAGTTTAGCTACAACCAGTTCCAACTCACACCTGGTAGTAACGCTGAAGACCTGGGCTGCGTTCAGCCCCGACAAAACGTTGCAAAACGTTTTTTAAATGGAAACGGTGGTACGCTGAACACCCTGTTCTGATGACGCAAGAGTTGCAACTATGGCAGCTGAGAAGGCCATTCTTTGTGTTCTTTTTGAAGAATAGATATGCTATATTTTTACTATAAAACTCTTATGACAAACATGTCTTCTAATATCTTCAGTTGTTGCATATACCGAGCTCCAGCGGACACATTTGTAAACGACTTTACTTGGACCCATTGTGTGAGCTGTCTCTATAATACCGCGTGGTTTATATACATGTTGATGCTGATTGGGCATTTTGACACACCCACCAAACAAGAGAAAACGTATCTCAAACCTCGTTGCACACCATTTCCAGGAAACATGTCTATTTTGTTTAATATGGTGTTCAACCCGGAAACCGTAGCAAAACTTTGCGCACCGGTTTAAGCTTGAATGTGCCCCTTGATTAGCTGGATCAGGTGTGTTTGATTAGGGTTGGAGCAAAACTGTTCAGAGCTGTGGCCCTCTAGGAACTGAGTTTCAGACCAGTGTTTTAGCTCTTTGCATAGCTAGTCTATTACACATTGTCATCCATTTGGAAAGTTCTCAAAATATTGATGTTTATATTTGTTGTTTCAGTGCTGTTTAGATTTTTAGATGTTTAAAAATTGTTTTGCTTTTTAACTTTAAACATTCTCTGTTCTAGTTATTAGGTAATTAATACATTTCTAACCAAATTACATTTGTACAGAATGTCCATGCGTCTCTGGATGTATTTCCAGTGGAATTTGTATCTAAGACACTTCTCAGAAAGGTTGGTATTAATCTGTGTCTACAATCTGTCAATGTTGTGTTCCATAATACCGTGACCTTTTCATGTACAGTAAATTAATTTAAATAATTTATTAAATGTATTAAATTAAGTAAATAATGTATGTTTTTGTTCAAACTATGAATGGATCAGTATCCCAAAATATTTAGCTCTGTTGTAATGTTAATAACTTCACATTGAATGTATGCTAATGTGAAGGGTACTTTATTGCAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321774 lncRNA upstream 11149 262612 ~ 262831 (+) True G283903
TU321652 lncRNA upstream 30071 240653 ~ 243909 (+) True G283797
TU321648 lncRNA upstream 51942 221802 ~ 222038 (+) True G283793
TU321645 lncRNA upstream 58747 209265 ~ 215233 (+) True G283790
TU321624 lncRNA upstream 131261 142489 ~ 142719 (+) True G283777
TU321804 lncRNA downstream 21015 298283 ~ 300326 (+) True G283925
TU321834 lncRNA downstream 102648 379916 ~ 380158 (+) True G283951
TU321806 lncRNA downstream 363161 640429 ~ 642060 (+) True G283927
TU322027 lncRNA downstream 368403 645671 ~ 646059 (+) True G284111
TU322033 lncRNA downstream 385325 662593 ~ 662875 (+) True G284117
CI01000072_00245767_00246460.mRNA mRNA upstream 27299 244444 ~ 246681 (+) True CI01000072_00245767_00246460
CI01000072_00196391_00200157.mRNA mRNA upstream 73475 196391 ~ 200505 (+) True CI01000072_00196391_00200157
CI01000072_00146339_00152728.mRNA mRNA upstream 120594 146339 ~ 153386 (+) True CI01000072_00146339_00152728
CI01000072_00127835_00129847.mRNA mRNA upstream 143973 127755 ~ 130007 (+) True CI01000072_00127835_00129847
CI01000072_00114969_00116445.mRNA mRNA upstream 157293 114931 ~ 116687 (+) True CI01000072_00114969_00116445
CI01000072_00295802_00308710.mRNA mRNA downstream 17933 295201 ~ 309557 (+) True CI01000072_00295802_00308710
CI01000072_00315525_00322937.mRNA mRNA downstream 35789 313057 ~ 323069 (+) True CI01000072_00315525_00322937
CI01000072_00338411_00351144.mRNA mRNA downstream 59803 337071 ~ 351276 (+) False CI01000072_00338411_00351144
CI01000072_00368515_00382013.mRNA mRNA downstream 91247 368515 ~ 382719 (+) True CI01000072_00368515_00382013
CI01000072_00400359_00403220.mRNA mRNA downstream 122548 399816 ~ 403514 (+) True CI01000072_00400359_00403220
TU321805 other downstream 71856 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 1704262 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 3692989 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 3891836 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 3891836 4169104 ~ 4175651 (+) True G286470

Expression Profile