RNA id: CI01000072_00127835_00129847.mRNA



Basic Information


Item Value
RNA id CI01000072_00127835_00129847.mRNA
length 867
RNA type mRNA
GC content 0.45
exon number 3
gene id CI01000072_00127835_00129847
representative True

Chromosome Information


Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 127755 ~ 130007 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATAAATACAGGTTTTGCAGGTCTTTGCCTCAATTCTTCTTAACTTTGTTACTTTTTTCTCTTACATTCCCCCAAAATTATGCTCTCAGTGAGTTGGACAGGGACCCTGCCCTGTGGTGGATGGGACTGTGAATGTGCATTCAGGAGCCAGCAGGGTTGTTGTTGTGTTGCGAAGCCACTGTTTGAGCTGGAGGAAGCCACCTTCATACGTTTAGTTGGCTTATGGGAAGGATTGTCTCGCCTGAACAGCCAAATAGAGGAAGTTACAGCTGGATGCAAGATAGCCTTCACTGCTGCAATGCTACCAATGAGTGGATGTCTTGGGCCTTTCACCAGCAACATGTCTATCTCTTACCAGTCTGTCTCACTCAATCAAGGGAATGGGTACAATGCTGCGTTGGGTACATTCACGGCCCCCCACGCTGGTCTCTACTTCTTCTCCTTCTCGGCTTATTCCAAAGTTGGCGATGCAGGTGAGCGGCTCTACCAAAAGGTGCAGTTGATGAAGAACGGTCAGCTGATTGCCTCATCCTGGGAAGATAACCGTGAGGATTCAGAGGATAGTAGCACTCAGACTGTTCTTCTCCAGCTTAGACGTGGCTGTCAGGTCTATACTGAGTTGCTTTCAGGCAGACAGCTTTGTGGAGACACCCAGGGCCACAACACTTTCAGTGGATACCTGATATATCCATTCTCTGAGCAATGAGAAAAAACCTGTAAACACACACAAACACAACAATCTTCATTGTAATGCCTGCCATCAGAGATTTAAAAAGATGTTAATCTGGTGAATCTGGAATTCTTCATGTAAAATGTACAAAATTAACATGTACCCTACCATTGGAAGACAGTATATGGCTTAATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU321605 lncRNA upstream 30325 97223 ~ 97430 (+) True G283760
TU321557 lncRNA upstream 107158 20382 ~ 20597 (+) True G283715
TU321618 lncRNA downstream 5017 135024 ~ 135223 (+) True G283772
TU321622 lncRNA downstream 9085 139092 ~ 139578 (+) True G283776
TU321624 lncRNA downstream 12482 142489 ~ 142719 (+) True G283777
TU321645 lncRNA downstream 79258 209265 ~ 215233 (+) True G283790
TU321648 lncRNA downstream 91795 221802 ~ 222038 (+) True G283793
CI01000072_00114969_00116445.mRNA mRNA upstream 11068 114931 ~ 116687 (+) True CI01000072_00114969_00116445
CI01000072_00079524_00085764.mRNA mRNA upstream 41279 78303 ~ 86476 (+) True CI01000072_00079524_00085764
CI01000072_00055224_00076836.mRNA mRNA upstream 50400 55178 ~ 77355 (+) True CI01000072_00055224_00076836
CI01000072_00146339_00152728.mRNA mRNA downstream 16332 146339 ~ 153386 (+) True CI01000072_00146339_00152728
CI01000072_00196391_00200157.mRNA mRNA downstream 66384 196391 ~ 200505 (+) True CI01000072_00196391_00200157
CI01000072_00245767_00246460.mRNA mRNA downstream 114437 244444 ~ 246681 (+) True CI01000072_00245767_00246460
CI01000072_00275132_00275592.mRNA mRNA downstream 143973 273980 ~ 277268 (+) False CI01000072_00275132_00275592
CI01000072_00295802_00308710.mRNA mRNA downstream 165194 295201 ~ 309557 (+) True CI01000072_00295802_00308710
TU321805 other downstream 219117 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 1851523 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 3840250 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 4039097 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 4039097 4169104 ~ 4175651 (+) True G286470

Expression Profile