RNA id: TU321805



Basic Information


Item Value
RNA id TU321805
length 643
RNA type TUCP
GC content 0.47
exon number 4
gene id CI01000072_00338411_00351144
representative True

Chromosome Information


Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 337071 ~ 351288 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTCCCAGCCCACGGGCCCTGATGTGTTCATCAGCTACCGTCGCACTACAGGTTCACAGCTTGCCAGCCTACTGAAGGTGCATCTACAGTTACGTGGTTTCAGCGTCTTCATTGACGTGGAGAAACTGGAAGCCGGGAGGTTCGAGGAGAAGCTGATCACGAGTGTGCAGCAGGCACGAAACTTCATCTTGGTGCTGTCAGCCAATGCGTTGGACAAATGCATGGGTGACGTGGCAATGAAAGACTGGGTTCATAAGGAGATAGTCACGGCTCTGAATGGGAAGAAGAACATCGTTCCTGTCACTGATAACTTTGTGTGGCCTGATCCGGCCTCTCTGCCAGAGGACATGAGCACCATTCTCAAATTTAATGGCATTAAGTGGTCCCATGAGTATCAGGAAGCCACTATCAACAAGATTCTGCGCTTCCTCAAGGCATGCCCCAGCCAAGAACAACCAGATGCTGCAAAAACAGACAAAAAAGAGCCAGAAAAGGAATAATGTTGCATTAAGTAATTGCCGTCATGTAACCAAAACACACCTGTTACCCCTCAGAGGCCAGTGTTTCCTTTGGTTGTATGCATGTAGCTGGTCTAGATAGATTACTGTTGAATTTTCTTGGGAGAAAAAGATATAAATGTAACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU321804 lncRNA upstream 48798 298283 ~ 300326 (+) True G283925
TU321777 lncRNA upstream 73631 275012 ~ 275493 (+) True CI01000072_00275132_00275592
TU321774 lncRNA upstream 86293 262612 ~ 262831 (+) True G283903
TU321652 lncRNA upstream 105215 240653 ~ 243909 (+) True G283797
TU321648 lncRNA upstream 127086 221802 ~ 222038 (+) True G283793
TU321834 lncRNA downstream 28628 379916 ~ 380158 (+) True G283951
TU321806 lncRNA downstream 289141 640429 ~ 642060 (+) True G283927
TU322027 lncRNA downstream 294383 645671 ~ 646059 (+) True G284111
TU322033 lncRNA downstream 311305 662593 ~ 662875 (+) True G284117
TU322037 lncRNA downstream 316485 667773 ~ 668011 (+) True G284121
CI01000072_00315525_00322937.mRNA mRNA upstream 26055 313057 ~ 323069 (+) True CI01000072_00315525_00322937
CI01000072_00295802_00308710.mRNA mRNA upstream 39567 295201 ~ 309557 (+) True CI01000072_00295802_00308710
CI01000072_00275132_00275592.mRNA mRNA upstream 71856 273980 ~ 277268 (+) False CI01000072_00275132_00275592
CI01000072_00245767_00246460.mRNA mRNA upstream 102443 244444 ~ 246681 (+) True CI01000072_00245767_00246460
CI01000072_00196391_00200157.mRNA mRNA upstream 148619 196391 ~ 200505 (+) True CI01000072_00196391_00200157
CI01000072_00368515_00382013.mRNA mRNA downstream 17227 368515 ~ 382719 (+) True CI01000072_00368515_00382013
CI01000072_00400359_00403220.mRNA mRNA downstream 48528 399816 ~ 403514 (+) True CI01000072_00400359_00403220
CI01000072_00404877_00406183.mRNA mRNA downstream 53589 404877 ~ 407092 (+) True CI01000072_00404877_00406183
CI01000072_00441183_00448301.mRNA mRNA downstream 89338 440626 ~ 448472 (+) True CI01000072_00441183_00448301
CI01000072_00453946_00487772.mRNA mRNA downstream 102453 453741 ~ 488634 (+) True CI01000072_00453946_00487772
TU322715 other downstream 1630242 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 3618969 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 3817816 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 3817816 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 3873550 4232318 ~ 4232421 (+) False G286474

Expression Profile